Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1762X
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   2.0  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   2.0  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   3.4  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.5  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    24   6.0  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    24   7.9  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 155 RDSENYRFIRKALICGCVTRVL 90
           R + NY+ ++ + ICGC  R+L
Sbjct: 126 RQTTNYQHVKVSGICGCFERLL 147


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 176 YLNYTNRTHLVER---ESDSDNCMTAGRDDENAPIFTLL 283
           Y N+T     V+      D+ + +  G DDEN PI+ LL
Sbjct: 366 YQNFTTTNTTVKNPFERFDTIDLVDGGEDDENIPIWPLL 404


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 314 SELRTTPPCSGGG 276
           SELR+TPP  GGG
Sbjct: 235 SELRSTPPFVGGG 247


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 230 NCMTAGRDDENAPIFTLLLSMVAWCVARTLGART 331
           +C+++        +F   +SM+ +CV   +G +T
Sbjct: 392 SCISSNSAGHTKKVFMSAVSMIGYCVGNMVGPQT 425


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 313 PSYAPRHHAQEEG 275
           PSYAPRH  Q  G
Sbjct: 500 PSYAPRHPTQANG 512


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 277 GKYRRVFIITSRGHAI 230
           G+Y RVFI+ + G+A+
Sbjct: 211 GRYMRVFILAAPGYAV 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,656
Number of Sequences: 5004
Number of extensions: 25794
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)