Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1762X
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0316 + 14261942-14262506,14262710-14263134 29 1.0
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 28 1.8
11_03_0057 + 9375083-9375088,9375904-9376031,9376107-9376166,937... 27 3.1
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400... 27 4.1
02_02_0643 + 12590928-12592172,12592609-12592698 27 5.5
07_01_0620 - 4600046-4600288 26 7.2
01_06_0508 - 29897536-29897982 26 7.2
10_08_0852 + 21073620-21074279,21074323-21074748 26 9.6
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 26 9.6
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 26 9.6
>04_03_0316 + 14261942-14262506,14262710-14263134
Length = 329
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 332 QFEHLTSELRTTPPCSGGG 276
+F SE TTPPC GGG
Sbjct: 91 RFVSFASESETTPPCGGGG 109
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 5 VRAGYPPTQQRNSVPNP*HSSRYTRPQNTTHAS 103
V+AG PP QQ + PNP + + QN A+
Sbjct: 1957 VQAGAPPEQQNPTPPNPVQAGASSEQQNPATAA 1989
>11_03_0057 +
9375083-9375088,9375904-9376031,9376107-9376166,
9376832-9376892,9377434-9377583,9377667-9377822,
9377905-9378116,9378572-9378673,9378785-9378924,
9379781-9379932
Length = 388
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 20 PPTQQRNSVPNP*HSSRYTRPQNTTH-ASHIRKSTL 124
PP +Q NS+P P RPQNT + A + K L
Sbjct: 282 PPERQHNSLPRPSVLYSDDRPQNTANIAEDLSKCVL 317
>08_02_1323 -
26136015-26137876,26138300-26139229,26139922-26140068,
26140139-26140360,26140513-26140555
Length = 1067
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 343 ENCRSSST*RPSYAPRHHAQEEGKYRRVFIITSRG 239
+NC + S+ P+ A H A EEG +R+ ++ G
Sbjct: 57 KNCGNPSSPSPTAAAAHAAVEEGDGKRLLLLRDDG 91
>02_02_0643 + 12590928-12592172,12592609-12592698
Length = 444
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 301 PRHHAQEEGKYRRVFIITSRGHAIITIRF 215
PR E G+ +++ SRGH ++ +RF
Sbjct: 251 PRPTMPEPGEVLARYLVESRGHLLMVVRF 279
>07_01_0620 - 4600046-4600288
Length = 80
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 272 ISARFHHHVPRSCN-YHYPIPVQLSA 198
I+ARFH H P++ Y++P P S+
Sbjct: 14 IAARFHSHCPQTARMYYHPPPSSSSS 39
>01_06_0508 - 29897536-29897982
Length = 148
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 277 PPPEHGGVVRSSDVRCSNCGSS 342
PPP HG +S RC+ CG S
Sbjct: 77 PPPRHGAKTKS---RCAACGRS 95
>10_08_0852 + 21073620-21074279,21074323-21074748
Length = 361
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 335 PQFEHLTSELRTTPPCSGGG*ISARFHHHVPRSCNYHYPIP 213
P F L R +PP G G ++ R + VP +Y Y +P
Sbjct: 51 PPFPWLMLPERESPP--GAGAVARRVFYDVPGGRSYGYRVP 89
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 262 RADIYPPPEHGGVVRSSDV 318
+ D +PPP GGVVR +V
Sbjct: 312 KRDPWPPPWSGGVVRGGEV 330
>07_03_0918 -
22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 257 ENAPIFTLLLSMVAWCVART 316
+N+P+FT +L+MV CV T
Sbjct: 121 KNSPLFTDILNMVCGCVDNT 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,599,771
Number of Sequences: 37544
Number of extensions: 185515
Number of successful extensions: 421
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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