Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1762X
         (352 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB058746-1|BAB47472.2| 1778|Homo sapiens KIAA1843 protein protein.     29   3.1  
X07979-1|CAA30790.1|  798|Homo sapiens protein ( Human mRNA for ...    28   9.5  
BX537407-1|CAD97649.1|  823|Homo sapiens hypothetical protein pr...    28   9.5  
BC113901-1|AAI13902.1|  126|Homo sapiens ITGB1 protein protein.        28   9.5  
BC020057-1|AAH20057.1|  798|Homo sapiens integrin, beta 1 (fibro...    28   9.5  
AL365203-2|CAI14426.1|  798|Homo sapiens integrin, beta 1 (fibro...    28   9.5  

>AB058746-1|BAB47472.2| 1778|Homo sapiens KIAA1843 protein protein.
          Length = 1778

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 346 PENCRSSST*RPSYAPRHHAQEEG 275
           PE CRS  + RPS  P H  Q +G
Sbjct: 172 PEECRSFMSGRPSQTPEHDEQMQG 195


>X07979-1|CAA30790.1|  798|Homo sapiens protein ( Human mRNA for
           integrin beta 1 subunit. ).
          Length = 798

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +2

Query: 176 YLNYTNRTHLVERESDSDNCMTAGRDDENAPIFTLLLSMVAWCVARTLGARTAAVLRL 349
           Y +Y +  HLV++ S+++        +E  P++  L +++      TL A ++ V++L
Sbjct: 313 YYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQL 370


>BX537407-1|CAD97649.1|  823|Homo sapiens hypothetical protein
           protein.
          Length = 823

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +2

Query: 176 YLNYTNRTHLVERESDSDNCMTAGRDDENAPIFTLLLSMVAWCVARTLGARTAAVLRL 349
           Y +Y +  HLV++ S+++        +E  P++  L +++      TL A ++ V++L
Sbjct: 338 YYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQL 395


>BC113901-1|AAI13902.1|  126|Homo sapiens ITGB1 protein protein.
          Length = 126

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +2

Query: 176 YLNYTNRTHLVERESDSDNCMTAGRDDENAPIFTLLLSMVAWCVARTLGARTAAVLRL 349
           Y +Y +  HLV++ S+++        +E  P++  L +++      TL A ++ V++L
Sbjct: 53  YYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQL 110


>BC020057-1|AAH20057.1|  798|Homo sapiens integrin, beta 1
           (fibronectin receptor, beta polypeptide, antigen CD29
           includes protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +2

Query: 176 YLNYTNRTHLVERESDSDNCMTAGRDDENAPIFTLLLSMVAWCVARTLGARTAAVLRL 349
           Y +Y +  HLV++ S+++        +E  P++  L +++      TL A ++ V++L
Sbjct: 313 YYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQL 370


>AL365203-2|CAI14426.1|  798|Homo sapiens integrin, beta 1
           (fibronectin receptor, beta polypeptide, antigen CD29
           includes protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +2

Query: 176 YLNYTNRTHLVERESDSDNCMTAGRDDENAPIFTLLLSMVAWCVARTLGARTAAVLRL 349
           Y +Y +  HLV++ S+++        +E  P++  L +++      TL A ++ V++L
Sbjct: 313 YYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQL 370


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,156,939
Number of Sequences: 237096
Number of extensions: 921839
Number of successful extensions: 1904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1904
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)