Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1762X
         (352 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF099922-5|AAK21406.1|  401|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    26   6.6  
Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical pr...    26   6.6  

>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 20  PPTQQRNSVPNP*HSSRYTRPQNTTHASHIRKST 121
           PPTQ R + PNP ++ + +RP   T   HI  +T
Sbjct: 297 PPTQTR-NPPNPTNTRQPSRPVPPTSDGHIEATT 329


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 11  AGYPP-TQQRNSVPNP*HSSRYTRPQ 85
           A YPP +QQ+   P P  +S+Y +PQ
Sbjct: 191 AAYPPASQQQGYPPQPQQNSQYGQPQ 216


>AF099922-5|AAK21406.1|  401|Caenorhabditis elegans Hypothetical
           protein F56F11.2 protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 239 TAGRDDE-NAPIFTLLLSMVAWCVARTLGARTAAV 340
           TAG D E N+ +FT+ +  V  C A+ +  RT  V
Sbjct: 166 TAGDDTERNSALFTIAVDPVNRCFAKLMSPRTMLV 200


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 342 RTAAVRAPNVRATHHATMLRRRVNIGAF 259
           R    R PNVR TH  T+L + ++   F
Sbjct: 204 RNTTTREPNVRQTHEKTLLIQAISSTIF 231


>Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical
           protein R07B5.9 protein.
          Length = 657

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -3

Query: 347 TGELPQFEHLTSELRTTPPCSGGG*ISARFHHHVPRSCNYHYPIP 213
           T + P F H  S+ + TP   G       + HH P   +  +  P
Sbjct: 391 TPQQPPFSHPNSQQQATPGSGGVPSCGPAYTHHTPEQQSQQFMSP 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,860,922
Number of Sequences: 27780
Number of extensions: 149603
Number of successful extensions: 301
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)