Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1761
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   3.3  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    25   7.6  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    25   7.6  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 226 IINEAINRHTAILFSNKPQTRTHTLTAR 309
           ++ ++ N+H A LFS+  +T T T+  R
Sbjct: 590 LLAQSTNKHVATLFSDYQETETKTVRGR 617


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 86  KLQD*IN*QTEKHRNYLKTWSSERHI 163
           KLQD I    E++ NY+K W+  + I
Sbjct: 130 KLQDAIRELEEENANYVKAWNLRKDI 155


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +2

Query: 242 SIVTLQYCSQINHRQEHTLSPLD 310
           +++  +YCSQ+ H  +  ++PL+
Sbjct: 36  NLIIEKYCSQVRHLADQPMAPLE 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,455
Number of Sequences: 5004
Number of extensions: 53751
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)