Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1761
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    31   1.00 
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    31   1.00 
Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 335 VYSKYTYCHLAVRVCVLVCGLF 270
           +YS + +CH     CV VC LF
Sbjct: 67  IYSPFIFCHRTANSCVAVCSLF 88


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 335 VYSKYTYCHLAVRVCVLVCGLF 270
           +YS + +CH     CV VC LF
Sbjct: 67  IYSPFIFCHRTANSCVAVCSLF 88


>Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical
            protein F23B2.11 protein.
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 505  IDVLVANTNYAYICTFHRYPWSYIFYSG*VDTFH 606
            ID  +ANTNY Y   FH    + +  +G VD +H
Sbjct: 936  IDYSIANTNYKYGERFHYRGTNVVLPNGNVDPWH 969


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 78  NVITDKHCNEISEWSENIY 22
           N+I DKHC ++ + +E+IY
Sbjct: 70  NIIADKHCEKVHKLTESIY 88


>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
            protein F23B2.12 protein.
          Length = 1080

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 505  IDVLVANTNYAYICTFHRYPWSYIFYSG*VDTFH 606
            ID +V NTNY Y   FH    + +F +G  D +H
Sbjct: 935  IDPMVDNTNYMYGERFHFRGSNVVFPNGNKDPWH 968


>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical protein
            F23B2.12 protein.
          Length = 1080

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 505  IDVLVANTNYAYICTFHRYPWSYIFYSG*VDTFH 606
            ID +V NTNY Y   FH    + +F +G  D +H
Sbjct: 935  IDPMVDNTNYMYGERFHFRGSNVVFPNGNKDPWH 968


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,674,305
Number of Sequences: 27780
Number of extensions: 296792
Number of successful extensions: 565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)