Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1760
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    54   3e-08
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    29   0.66 
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    28   1.5  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.0  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    26   4.7  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.2  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   8.2  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   8.2  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +3

Query: 258 SIAAVFMFVEPVQTF-IHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQA 434
           S+     ++ P  +F +  + W +I+ F +S+  L  LI+K    P N   L  FT ++ 
Sbjct: 74  SLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEG 133

Query: 435 YTIGVVVSYYNTMVVLQALALTFAVY 512
            T+G  +++++  ++L+A+ +T  V+
Sbjct: 134 LTLGTAITFFSARIILEAVFITLGVF 159



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = +1

Query: 85  MASIPLMYAQEDCELGGKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATS 258
           +A  P  Y++ + E   +    D F     V    + IR+AF+RKVY +LT QL  TS
Sbjct: 18  LAQAPPAYSEYN-ESATENPAVDQFKNTTPVAECAKSIRMAFLRKVYAILTAQLFVTS 74


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 183  IHYIVAVCKVILNRFLPS*FTVFLGVH*RYRSHFHKFRWVF 61
            + Y+V +   +LN+F    FT  +GV   YRS  H+ R  F
Sbjct: 1510 VEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAF 1550


>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 390 PANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAV-YFLSHCTRLTPNGTSH 557
           P  L  L A  ++ +Y + +V   YN  V+L A+A+  A  Y  SHC  +   G  H
Sbjct: 93  PFRLCALYAVQLVFSYFLMLVAMTYNAYVIL-AIAIGAAFGYRRSHCDTVQTVGLCH 148


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +3

Query: 378 RRDSPANLYLLAAFTVIQAYTIGVVVSYYNT 470
           ++D   +L++LAA+  ++ + + +V+ Y+NT
Sbjct: 208 QKDFHFDLHILAAYLGVEGHPLDLVIDYHNT 238


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 402 YLLAAFTVIQ---AYTIGVVVSYYNTMVVLQALALTFAVYFLSHCTRLTPNGTS 554
           +L + F ++Q   AY   ++  YYN  V+L     TF  YFL     ++   +S
Sbjct: 206 FLRSCFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGYFLFGADTISTKASS 259


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 77  NFVGFSTIYHVYYCRTFPI 21
           NF  +ST Y ++Y R FP+
Sbjct: 238 NFDDYSTSYELFYDRNFPL 256


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 237 SAAPGYVSIAAVFMFVEPVQTFIHTNNWMMII 332
           +A   +  I   F+  + + TF H NNW+ I+
Sbjct: 290 AAKQHFGDIRLYFVTPDDIYTFDHCNNWIAIV 321


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 649  SHFEGGALHHQLKKTPQNENCQTSYEHVSNE*EVPFGVKRVQCERKY 509
            S+F    L    KK P+N         VSNE  V  G K +Q  +K+
Sbjct: 1142 SYFTDSVLLSMAKKLPRNVKELKEIHGVSNEKAVNLGPKFLQVIQKF 1188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,884
Number of Sequences: 5004
Number of extensions: 64778
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)