Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1760
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 47 2e-05
03_05_1105 + 30438140-30438350,30438448-30438926 43 3e-04
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412... 42 5e-04
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914... 40 0.002
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 35 0.074
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312... 31 0.69
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 29 2.8
11_08_0094 - 28314681-28314747,28315264-28315353,28315589-283157... 29 3.7
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 29 3.7
11_04_0293 + 15926561-15928834 29 4.9
09_01_0154 + 2298432-2299415 28 6.4
05_04_0089 - 17821196-17821306,17821611-17821688,17821801-178218... 28 6.4
06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682 28 8.5
04_04_0264 + 24035282-24035686,24036877-24037118,24037230-240377... 28 8.5
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 VSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMGT----LIALIVKRRDSPANLYLLAAFT 422
V++A VEP++TF +++A+++ + + ++ +I R P NL+ L FT
Sbjct: 52 VAVAGAVNLVEPIKTFFQARTPEVLVAYVIIIISPLIMMLPMIYFRNKHPINLFFLLLFT 111
Query: 423 VIQAYTIGVVVSYYNTMVVLQALALTFAV 509
V ++++G+ N V+ QA +T A+
Sbjct: 112 VCISFSVGLGCLSKNGTVIFQAAGMTAAI 140
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 193 EIRLAFIRKVYGLLTVQLLATSPLRLYLCLLSPYKHLY 306
++R AFIRKVY +++VQLL T + + L+ P K +
Sbjct: 31 QLRWAFIRKVYVIVSVQLLVTVAVAGAVNLVEPIKTFF 68
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 VSIAAVFMFVEPVQTFIHTNNW---MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTV 425
+++A+V +FV PV F + + I IL L L + P NL LLA FT
Sbjct: 35 IAVASVVVFVRPVALFFVSTPAGFALYIFLIILPFIVLCPLYYYYQRHPVNLLLLALFTA 94
Query: 426 IQAYTIGVVVSYYNTMVVLQALALTFAV 509
++ +G+ ++ V+L++ LT AV
Sbjct: 95 AISFAVGLTCAFTKGEVILESAILTAAV 122
Score = 31.1 bits (67), Expect = 0.91
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 193 EIRLAFIRKVYGLLTVQLLATSPLRLYLCLLSP 291
++R AF+RKVY +L++Q+L T + + + P
Sbjct: 14 QLRWAFVRKVYAILSIQMLLTIAVASVVVFVRP 46
>07_01_0554 -
4121692-4121895,4121991-4122148,4123241-4123354,
4123824-4124082
Length = 244
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +3
Query: 258 SIAAVFMFVEPVQTFI---HTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVI 428
++AAV + V + F H + I IL L L + P NL LL FTV
Sbjct: 52 AVAAVVVKVRAISHFFVSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVA 111
Query: 429 QAYTIGVVVSYYNTMVVLQALALTFAVYF 515
++ +G+ ++ + V+L++ LT V F
Sbjct: 112 ISFAVGMTCAFTSGKVILESAILTTVVVF 140
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 178 MNAEREIRLAFIRKVYGLLTVQLLATSPLRLYLCLLSPYKHLY 306
M E+R A IRK+Y +L++QLL T+ + + + H +
Sbjct: 25 MTEPPEMRWALIRKIYVILSMQLLLTAAVAAVVVKVRAISHFF 67
>03_06_0293 -
32889813-32890019,32890144-32890301,32891310-32891423,
32891531-32891777
Length = 241
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Frame = +3
Query: 264 AAVFMFVEPV----QTFIHTNNWMMIIAFILSMGTLIALIVK--RRDSPANLYLLAAFTV 425
AAV FV V + F+ +N + F+L + ++ ++ + P NL LL FTV
Sbjct: 47 AAVAAFVVKVRGVSEFFVSSNAGFALYIFLLFLPLIVLCPLRYYHQKHPVNLLLLGLFTV 106
Query: 426 IQAYTIGVVVSYYNTMVVLQALALTFAV 509
++ +G+ +Y + V+ +A ALT V
Sbjct: 107 AISFAVGMTCAYTSGKVIFEAAALTAVV 134
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 34.7 bits (76), Expect = 0.074
Identities = 19/84 (22%), Positives = 42/84 (50%)
Frame = +3
Query: 258 SIAAVFMFVEPVQTFIHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAY 437
+++A+ + + + ++ + ++ +L ++ L + P N L FT+ ++
Sbjct: 72 AVSALTVLHPTLNATLSSSPTLALVLAVLPFVLMVPLYHYQHKHPHNFVYLGLFTLCLSF 131
Query: 438 TIGVVVSYYNTMVVLQALALTFAV 509
+IGV + +VL+AL LT AV
Sbjct: 132 SIGVACANTQGKIVLEALILTSAV 155
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 175 VMNAEREIRLAFIRKVYGLLTVQLLATSPLRLYLCLLSP 291
+ E +R F+RKVYG+L QLL T+ + L +L P
Sbjct: 44 ISRGESALRWGFVRKVYGILAAQLLLTTAVSA-LTVLHP 81
>11_06_0192 +
21128298-21128829,21129341-21129407,21131169-21131211,
21131301-21131367,21131613-21131770,21131863-21132057
Length = 353
Score = 31.5 bits (68), Expect = 0.69
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 130 GGKESVEDDFAYRNNVMNAEREIRL--AFIRKVYGLLTVQLLATSPLRLYLCLLSPYKHL 303
G KE V + R V E + RL AF+RKVY +L +Q T+ + + + P
Sbjct: 55 GEKEVVAEKAPARRKVAAEEEDPRLRWAFVRKVYCILALQFAVTAAIAVVAWAVRPIPRF 114
Query: 304 Y 306
+
Sbjct: 115 F 115
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 193 EIRLAFIRKVYGLLTVQLLAT 255
E+R AFIRKVY ++ QL+ T
Sbjct: 41 ELRWAFIRKVYAIVATQLVVT 61
>11_08_0094 -
28314681-28314747,28315264-28315353,28315589-28315725,
28317020-28317589
Length = 287
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 94 IPLMYAQEDCELGGKESVED-DFAYRNNVMNAEREIRLAFIRKV 222
+PL Y +DC++ G + ++D D A N + E + RL + +V
Sbjct: 191 LPLFYFGDDCDMWGGDMLKDTDIALAPNFPSDEGQKRLEHLHRV 234
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 356 SDCIDRETTRFTRQSVSPGCIYCYPSVHHRRCRVILQ 466
SD + ++FT P CY +HH +C V LQ
Sbjct: 169 SDSLLYSVSQFTLLGTDPYHKLCYKELHHPKCDVCLQ 205
>11_04_0293 + 15926561-15928834
Length = 757
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 688 EEHAEEYRADDGQSHFEGGALHHQLKKTPQNENCQTSYEHVSNE 557
+E EEY +DDG+ +GG L L + Q+ + +T E S +
Sbjct: 360 DEEEEEYLSDDGKDDDDGGGLQAPL-LSRQSTDVETKNEPASGQ 402
>09_01_0154 + 2298432-2299415
Length = 327
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Frame = +3
Query: 354 TLIALIVKRRDSPANLYLLAA-------FTVIQAYTIGVVVSYYNTMVVLQALALTFAVY 512
TLIA +V P +Y +AA FT + +GVV ++ V LQ L+ T A
Sbjct: 243 TLIACLVPAAICP--VYTIAAALSDELLFT-FYVWLLGVVFGFFLLPVALQLLSTTAATV 299
Query: 513 FLSHC 527
F HC
Sbjct: 300 FYYHC 304
>05_04_0089 -
17821196-17821306,17821611-17821688,17821801-17821863,
17822167-17823021,17823121-17823236,17823930-17824004,
17826156-17826213
Length = 451
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 715 PHHLVRVVNEEHAEEYRADDGQSHFEGGALHHQLKKT--PQNENCQTSYE 572
P V ++ E A ++ +S F A+HH LK + P EN T E
Sbjct: 178 PSKEVPAISAESAHHWKETPAESLFSSNAVHHSLKTSFPPLRENPATLNE 227
>06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682
Length = 511
Score = 27.9 bits (59), Expect = 8.5
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = +3
Query: 249 GYVSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVI 428
G V + + MF+ + + + WM ++ L V+ AN LLA +
Sbjct: 303 GSVHVVIMCMFITSMLSMLLMMLWMKVLES--KKPKLREFFVRATIPRANAALLALLAIA 360
Query: 429 Q-AYTIGVVVSYYNTMVVLQALALTFAVYFLSHCTR 533
A + G++ Y + ALA T + + HCTR
Sbjct: 361 AFAASFGILRWYMVAAFLTLALAATVQ-FVIQHCTR 395
>04_04_0264 +
24035282-24035686,24036877-24037118,24037230-24037750,
24038262-24038746
Length = 550
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 519 RENTRRMLKPELATPPWCCSMT 454
R N +L ++ TP WCCS T
Sbjct: 143 RNNIMVILDNQMTTPGWCCSTT 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,312,845
Number of Sequences: 37544
Number of extensions: 429327
Number of successful extensions: 1132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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