Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1760
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily ass...    54   1e-07
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    44   8e-05
Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical p...    31   0.82 
Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical pr...    31   0.82 
AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical p...    28   7.7  

>U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 132 protein.
          Length = 276

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%)
 Frame = +3

Query: 255 VSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQA 434
           + I A    +      +  + W++    + S+  +IAL V  R+ P N  LLAAFT +QA
Sbjct: 89  IGICAAIYNIPNSNQLLQKHAWIVFPNLLGSIALIIALHVYAREVPLNYVLLAAFTAVQA 148

Query: 435 YTIGVVVSYYNTMVVLQALALT 500
            T+G VV+ +   VVL+A  +T
Sbjct: 149 VTMGCVVTLFEAKVVLEAAVIT 170



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +1

Query: 175 VMNAEREIRLAFIRKVYGLLTVQLLAT 255
           V  A R IR+AF+RKV G++  QLL T
Sbjct: 62  VGKANRMIRIAFLRKVLGIVGFQLLFT 88



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 509 VFSLTLYTLNSKRDFSFIGY-MXXXXXXXXXXXXXXXXXXQSAAFEMALSIVGAIFFSMF 685
           V SL  YTL +KRDFS +GY                     S A    +++ GA  F + 
Sbjct: 174 VASLFAYTLQNKRDFS-VGYASMGSLLCVLLWAGIFQMFFMSPAVNFVINVFGAGLFCVL 232

Query: 686 LVYDTHQMM 712
           LV D   +M
Sbjct: 233 LVIDLDMIM 241


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 276 MFVEPVQTFIHTNNWMMIIAFILSMGTLIALIV---KRRDSPANLYLLAAFTVIQAYTIG 446
           M  EP Q ++  N W+  IA I+ +   IAL      RR  P N+ LL  FT+  A    
Sbjct: 54  MVSEPFQDWVKNNFWVYFIAIIVFLVVAIALSCCGNLRRQFPVNIILLTIFTLSAAVMTM 113

Query: 447 VVVSYYNTMVVLQALALT 500
            V + YN   VL  L +T
Sbjct: 114 FVTACYNVQSVLICLCIT 131



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +1

Query: 133 GKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATSPLRLYLCLLSPYK 297
           G  + +DD   + N+  + + +R AF+RKV+ L+T+    T+   +   +  P++
Sbjct: 6   GATTAQDDPDGKYNLHFSSQTVRAAFVRKVFMLVTIMFAITAAFCVIPMVSEPFQ 60


>Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1a protein.
          Length = 296

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +3

Query: 303 IHTNNWMMIIAFILSMGTLIALIV---KRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTM 473
           +  N+ + + ++++   T ++L+     RR  P NL +   FT+  +    V+ ++++  
Sbjct: 115 VRRNSALYLGSYVIFFVTYLSLVCCEGVRRKFPVNLIVTGIFTLATSVMTMVISAHHDAN 174

Query: 474 VVLQALALTFAVYF 515
           VVL ALA+     F
Sbjct: 175 VVLLALAICIGCTF 188


>Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1b protein.
          Length = 296

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +3

Query: 303 IHTNNWMMIIAFILSMGTLIALIV---KRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTM 473
           +  N+ + + ++++   T ++L+     RR  P NL +   FT+  +    V+ ++++  
Sbjct: 115 VRRNSALYLGSYVIFFVTYLSLVCCEGVRRKFPVNLIVTGIFTLATSVMTMVISAHHDAN 174

Query: 474 VVLQALALTFAVYF 515
           VVL ALA+     F
Sbjct: 175 VVLLALAICIGCTF 188


>AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical
           protein C03H5.2 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +3

Query: 300 FIHTNNWMMIIAFILSM--GTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVS--YYN 467
           F+   N ++ I  +L    G +IAL+VK  D+    + ++   ++ ++T  +V+      
Sbjct: 249 FLRGYNGVIWIVVLLQAYGGLVIALVVKYADNILKGFAVSLSIILSSFTSWLVLGDLTIT 308

Query: 468 TMVVLQALALTFAVYFLSHCTRLTP 542
           T   + A  + FA +   H  + TP
Sbjct: 309 TTFAIGATVVIFATFLYGHEPKSTP 333


>Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical
           protein ZK1320.6 protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 247 GAALSGDRRLSV*RRDGSPFQHSLHCC 167
           G AL+G     + + +  PFQH  HCC
Sbjct: 485 GYALNGHMDALLSQLEALPFQHHFHCC 511


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,403,594
Number of Sequences: 27780
Number of extensions: 380345
Number of successful extensions: 973
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)