Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1760
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.8  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 712 HHLVRVVNEEHAEEYRADDGQSHFE 638
           H  V VVN++   E+  DD + H E
Sbjct: 402 HIKVFVVNKDILHEHNVDDNEDHDE 426


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 446 RCRVILQH--HGGVASSGFNIRRVFSLTLYTLNSKRDFSFI 562
           RCR+      H G   + F  ++ F +  YT NSK DF  I
Sbjct: 182 RCRINFGSWVHSGEEVNIFLDKKGFHMDGYTNNSKWDFKVI 222


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 447 VVVSYYNTMVVLQALALTFAVYFLSHCTRLT 539
           +V++  N MVVL  + +  AVY  S    +T
Sbjct: 70  IVLAIVNVMVVLGNVLVILAVYHTSKLRNVT 100



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 646 HFEGGALHHQLKKTPQNENCQTS 578
           H+  G  H QL  TP++ + + S
Sbjct: 371 HYSNGQTHSQLCPTPRSTHLKVS 393


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 57  NLSRILL*DFPNLRV 13
           NLSR +L D PNL++
Sbjct: 492 NLSRGMLWDLPNLQI 506


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = -1

Query: 481 NTTMVL*YDTTTPMVYAWITVNAARRYRLAGES 383
           N   +L + +    V +W+  +  R Y L  E+
Sbjct: 258 NNDRILYFHSLASRVESWVNTSVIRNYTLFNEN 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,255
Number of Sequences: 438
Number of extensions: 4468
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)