Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1759
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    36   0.006
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    27   3.8  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    25   8.7  

>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +3

Query: 9   RYGPPTRTEYRLIVENLSSRISWQ 80
           +Y  P RT +RLIVENLS  +SWQ
Sbjct: 89  KYPRPRRTGFRLIVENLSEDVSWQ 112


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 1   TIIDTDRQRAPSIDLSSRICLAALAGR*APCKWITYHHSSHITRVVARARAAEDTAYWT 177
           T ++  +Q+ P ID+   I    L G  A  K + Y     I RVV   +  +D  Y T
Sbjct: 63  TFVNYLQQKDPEIDIVQPILKHILRGLDAKDKTVRYRCCQIIARVVNCVKEIDDDLYNT 121


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 327 QRIFSEDLCFLWPI--VSMLLAFHQMSSSVVHRSIGP 223
           QR F+E +  +W +  VS L+  H  S  V+HR + P
Sbjct: 120 QRKFNESVIRIWMVELVSALIYIH--SKGVLHRDVKP 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,094
Number of Sequences: 5004
Number of extensions: 69413
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)