Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1759
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0346 - 24239934-24240844,24241794-24242145 33 0.32
01_06_1017 + 33862565-33862913,33863963-33864867 33 0.32
01_01_0336 + 2712412-2712576,2713663-2713738,2713840-2713898,271... 31 0.98
05_01_0379 + 2975701-2976831 29 3.9
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 28 6.9
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 28 6.9
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706... 28 6.9
09_01_0126 + 1896155-1896253,1897425-1897969,1898303-1898384,189... 28 9.1
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 28 9.1
>05_05_0346 - 24239934-24240844,24241794-24242145
Length = 420
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 4 IIDTDRQRAPSIDLSSRICLAALAGR*APCKWITYHHSSHITRVVARARAAEDTAY 171
+ D DR + R LA L G P ++ +H+S H TR+ A +DT Y
Sbjct: 49 LADADRSAPQPTGANIRRELARLVGDARPGDFLFFHYSGHGTRLPAETGQDDDTGY 104
>01_06_1017 + 33862565-33862913,33863963-33864867
Length = 417
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 4 IIDTDRQRAPSIDLSSRICLAALAGR*APCKWITYHHSSHITRVVARARAAEDTAY 171
++D D + R LA L G P ++ +H+S H TR+ A +DT Y
Sbjct: 48 LLDRDSSGTQPTGANIRRALAQLVGDARPGDFLFFHYSGHGTRLPAETGQNDDTGY 103
>01_01_0336 +
2712412-2712576,2713663-2713738,2713840-2713898,
2714009-2714148,2714690-2714745,2714832-2714908,
2715007-2715075
Length = 213
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 709 CGRRTTRRNSTSPETTSHSATHIDRTGHLLLFLKII 602
CG RTT+ ST+ + H+ +H+ T L LKI+
Sbjct: 87 CGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIV 122
>05_01_0379 + 2975701-2976831
Length = 376
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 259 LMERKKHTHNWPKKTKILREDPLSLKLADGLD*YLVETCKQNAYHNALGTRGPFG 423
L++ THNWP T + + ++L DG + +V ++ TR P G
Sbjct: 232 LLDHFAATHNWPCTTNVRAREVFDVRLHDGFNFLVVGGASRHHLVMMNMTREPLG 286
>09_04_0076 +
14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 711 HAGAGRRGATLHRLRPHHTAQRTSTGL 631
HAG GRRGA+ L+PH A R S +
Sbjct: 13 HAG-GRRGASARPLQPHAAAFRASQAI 38
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
R G RT+YR++V L S SWQ
Sbjct: 99 RRGAAKRTDYRVMVTGLPSSASWQ 122
>01_05_0264 +
20168409-20168593,20168726-20169055,20170142-20170670,
20170825-20170958,20171080-20171252,20171274-20171840,
20172487-20172716,20172954-20172995,20173096-20173224
Length = 772
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 736 PTLPGGLLACGRRTTRRNSTSPETTSHSATHIDRTGHLLL 617
P P LLA RR ++T+ T+ H A R HLLL
Sbjct: 71 PGAPPPLLATPRRAVLASATASRTSFHRAGLCHRRPHLLL 110
>09_01_0126 +
1896155-1896253,1897425-1897969,1898303-1898384,
1898710-1898832
Length = 282
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 259 NVKLSGPSVHWSSPTLIH 206
N LSGP WSSP +IH
Sbjct: 129 NPHLSGPKDGWSSPVIIH 146
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = -3
Query: 412 LECPVRCGMRFVYKSPP--DISPNHQQVSTTADLL--*GSLFSLANCEYA-SCVPSNVKL 248
L+CP RC + K PP I P ++ DLL G L A+C A SC + +
Sbjct: 81 LDCPTRCALPRAPKWPPLLQIPPPERRAVGDGDLLSSAGDLPDAASCRAAGSCAAAFLVT 140
Query: 247 SG 242
G
Sbjct: 141 GG 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,914,614
Number of Sequences: 37544
Number of extensions: 472315
Number of successful extensions: 1360
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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