Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1759
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor ... 52 2e-06
BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor, argini... 52 2e-06
BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor, argini... 52 2e-06
AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor, argini... 52 2e-06
AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor, argini... 52 2e-06
AK223444-1|BAD97164.1| 382|Homo sapiens splicing factor, argini... 52 2e-06
AC004236-1|AAC04476.1| 192|Homo sapiens SRP0001LB protein. 52 2e-06
AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor, argini... 52 2e-06
U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein. 50 7e-06
U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein. 50 7e-06
BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor, argini... 50 7e-06
AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor, argini... 50 7e-06
AB208976-1|BAD92213.1| 279|Homo sapiens arginine/serine-rich sp... 50 7e-06
AB209804-1|BAD93041.1| 326|Homo sapiens CS0DF038YO05 variant pr... 46 1e-04
U30826-1|AAA93070.1| 272|Homo sapiens SRp40-1 protein. 44 8e-04
BT007089-1|AAP35752.1| 272|Homo sapiens splicing factor, argini... 44 8e-04
BC040209-1|AAH40209.1| 272|Homo sapiens splicing factor, argini... 44 8e-04
BC018823-1|AAH18823.1| 272|Homo sapiens splicing factor, argini... 44 8e-04
DQ247958-1|ABB52637.1| 665|Homo sapiens envelope polyprotein pr... 30 7.7
>L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor
protein.
Length = 494
Score = 52.4 bits (120), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPPTRTEYRLIVENLSSR SWQ
Sbjct: 95 KYGPPTRTEYRLIVENLSSRCSWQ 118
>BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 52.4 bits (120), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPPTRTEYRLIVENLSSR SWQ
Sbjct: 95 KYGPPTRTEYRLIVENLSSRCSWQ 118
>BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 52.4 bits (120), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPPTRTEYRLIVENLSSR SWQ
Sbjct: 95 KYGPPTRTEYRLIVENLSSRCSWQ 118
>AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 52.4 bits (120), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPPTRTEYRLIVENLSSR SWQ
Sbjct: 95 KYGPPTRTEYRLIVENLSSRCSWQ 118
>AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 52.4 bits (120), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPPTRTEYRLIVENLSSR SWQ
Sbjct: 95 KYGPPTRTEYRLIVENLSSRCSWQ 118
>AK223444-1|BAD97164.1| 382|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 382
Score = 52.4 bits (120), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPPTRTEYRLIVENLSSR SWQ
Sbjct: 95 KYGPPTRTEYRLIVENLSSRCSWQ 118
>AC004236-1|AAC04476.1| 192|Homo sapiens SRP0001LB protein.
Length = 192
Score = 52.4 bits (120), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPPTRTEYRLIVENLSSR SWQ
Sbjct: 95 KYGPPTRTEYRLIVENLSSRCSWQ 118
>AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 419
Score = 52.4 bits (120), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPPTRTEYRLIVENLSSR SWQ
Sbjct: 20 KYGPPTRTEYRLIVENLSSRCSWQ 43
>U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein.
Length = 344
Score = 50.4 bits (115), Expect = 7e-06
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPP RTEYRLIVENLSSR SWQ
Sbjct: 101 KYGPPVRTEYRLIVENLSSRCSWQ 124
>U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein.
Length = 335
Score = 50.4 bits (115), Expect = 7e-06
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPP RTEYRLIVENLSSR SWQ
Sbjct: 101 KYGPPVRTEYRLIVENLSSRCSWQ 124
>BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 50.4 bits (115), Expect = 7e-06
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPP RTEYRLIVENLSSR SWQ
Sbjct: 101 KYGPPVRTEYRLIVENLSSRCSWQ 124
>AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 50.4 bits (115), Expect = 7e-06
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPP RTEYRLIVENLSSR SWQ
Sbjct: 101 KYGPPVRTEYRLIVENLSSRCSWQ 124
>AB208976-1|BAD92213.1| 279|Homo sapiens arginine/serine-rich
splicing factor 6 variant protein.
Length = 279
Score = 50.4 bits (115), Expect = 7e-06
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
+YGPP RTEYRLIVENLSSR SWQ
Sbjct: 135 KYGPPVRTEYRLIVENLSSRCSWQ 158
>AB209804-1|BAD93041.1| 326|Homo sapiens CS0DF038YO05 variant
protein.
Length = 326
Score = 46.0 bits (104), Expect = 1e-04
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQVSTL 92
R PP RTE RLIVENLSSR+SWQV L
Sbjct: 102 RNAPPVRTENRLIVENLSSRVSWQVCIL 129
>U30826-1|AAA93070.1| 272|Homo sapiens SRp40-1 protein.
Length = 272
Score = 43.6 bits (98), Expect = 8e-04
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
R PP RTE RLIVENLSSR+SWQ
Sbjct: 99 RNAPPVRTENRLIVENLSSRVSWQ 122
>BT007089-1|AAP35752.1| 272|Homo sapiens splicing factor,
arginine/serine-rich 5 protein.
Length = 272
Score = 43.6 bits (98), Expect = 8e-04
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
R PP RTE RLIVENLSSR+SWQ
Sbjct: 99 RNAPPVRTENRLIVENLSSRVSWQ 122
>BC040209-1|AAH40209.1| 272|Homo sapiens splicing factor,
arginine/serine-rich 5 protein.
Length = 272
Score = 43.6 bits (98), Expect = 8e-04
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
R PP RTE RLIVENLSSR+SWQ
Sbjct: 99 RNAPPVRTENRLIVENLSSRVSWQ 122
>BC018823-1|AAH18823.1| 272|Homo sapiens splicing factor,
arginine/serine-rich 5 protein.
Length = 272
Score = 43.6 bits (98), Expect = 8e-04
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 9 RYGPPTRTEYRLIVENLSSRISWQ 80
R PP RTE RLIVENLSSR+SWQ
Sbjct: 99 RNAPPVRTENRLIVENLSSRVSWQ 122
>DQ247958-1|ABB52637.1| 665|Homo sapiens envelope polyprotein
protein.
Length = 665
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 289 NCEYASCVPSNVKLSGPSVHWSSPTLIHF 203
NC Y C P + ++ P++ SSPTL F
Sbjct: 149 NCRYNQCNPVQISITIPTLQDSSPTLNRF 177
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,643,573
Number of Sequences: 237096
Number of extensions: 2690973
Number of successful extensions: 9192
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9182
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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