Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1759
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.57 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.3  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   5.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 455 VLNIRLMWSRFPNGPRVPSALWYAFCLQVS 366
           +L  RL W    + P  PSA+   FCL V+
Sbjct: 681 LLGSRLDWEDHASSPLEPSAVPSKFCLSVT 710


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 603 FHKLEGNSDTRLQFNIILYAN 541
           F+  +GN + R + N+++Y N
Sbjct: 116 FNNADGNYEVRYKSNVLIYPN 136


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 176 PGTTTYPNWKMNE 214
           P    YPNW+MN+
Sbjct: 90  PKLNPYPNWEMND 102


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 176 PGTTTYPNWKMNE 214
           P  T YPNW  N+
Sbjct: 107 PKLTPYPNWAQNK 119


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -1

Query: 441 IDVVQIPERPSSAQCVVV 388
           +D+  +PE+ +S++C V+
Sbjct: 71  VDISFLPEKSTSSRCAVI 88


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 321 IFSEDLCFLWPIVSMLLAF 265
           I  + +CF+ PI+ + LAF
Sbjct: 222 ILKKTVCFVIPIMLLFLAF 240


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 83   KHPANGLRIIIHH 121
            +H A GLR+ +HH
Sbjct: 1089 EHGAAGLRLCLHH 1101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,035
Number of Sequences: 438
Number of extensions: 5063
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)