Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1758
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    30   0.35 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    29   1.1  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 617 THKSILSLERTKPFHTLRPITVDDVGGEESSQDATTNNNQDP 742
           +H  +     T P H + PI+ D++   + S+ +  +N+Q+P
Sbjct: 338 SHSILQKPTDTSPLHKIEPISADELVESDDSRTSALSNSQNP 379


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 497 ASKSMGQARNNLGPTVTSLEECASRNAFNVDQTPGSHSNTVAKAGSL 357
           +S S+G   + L P++T  + C +  A      PGS +NT     SL
Sbjct: 415 SSTSLGHLESKLAPSITFPDACDALEAEECITRPGSATNTPQSDRSL 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,439
Number of Sequences: 5004
Number of extensions: 68612
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)