Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1758
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0072 - 6334613-6335215                                           30   2.0  
03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958...    30   2.0  
01_06_1714 - 39368509-39369153,39369607-39369850,39369995-393701...    30   2.6  
12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497           29   3.5  
04_04_0995 + 29985473-29985625,29986372-29986446,29986537-299870...    29   3.5  
10_01_0297 + 3093179-3093312,3093343-3093478                           28   8.0  

>05_02_0072 - 6334613-6335215
          Length = 200

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 161 RRKRLPKQTHVASCRAQQRKVAALPRRSPLRCTVRRCSLDTH 36
           RRK  P  +  +S  A  R  A LPRR+  R   R CS  T+
Sbjct: 134 RRKAPPAPSAASSTSAPTRSTATLPRRATTRRRGRGCSPPTN 175


>03_02_0844 +
           11695159-11695263,11695402-11695463,11695789-11695876,
           11695958-11696019,11696250-11696346,11696592-11696984,
           11697072-11697611,11697856-11697966,11698102-11698242,
           11698290-11698394,11698480-11698557,11699346-11699472,
           11699580-11699625,11699709-11699754
          Length = 666

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 624 LCVARDRPQRVSSDRTTRPLLGLLPKRTALCCNSTRPRTRLTSF 493
           +  A  R +   ++R  R LL L P R  + CN   P+   TSF
Sbjct: 1   MAAAASRKEEERNERVVRGLLKLPPNRRCINCNGLGPQYVCTSF 44


>01_06_1714 -
           39368509-39369153,39369607-39369850,39369995-39370191,
           39370607-39370708,39370826-39371026,39371138-39371381,
           39371813-39371983,39372450-39372751
          Length = 701

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 84  ARKRRYLPLLCSTTCNMRLLWETLSPDCCRPT 179
           AR+R  L + C    N  L W   S DC RP+
Sbjct: 562 ARERDLLSIACGRALNKALYWHHKSRDCPRPS 593


>12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497
          Length = 800

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 170 PPDNRNMPVIIGTMSQAT-CNTTNLQLHHTSGGSSLQIIWNRS 295
           PP N  +  I G ++  T CN  N  +++T GG   +++W  S
Sbjct: 535 PPPNLTVQ-IYGVLTTITLCNGDNFSINYTIGGIHNEMVWGES 576


>04_04_0995 +
           29985473-29985625,29986372-29986446,29986537-29987044,
           29987349-29987734,29988418-29988641,29988728-29988893,
           29989095-29989226
          Length = 547

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 22/69 (31%), Positives = 27/69 (39%)
 Frame = +1

Query: 403 WSTLNAFLEAHSSSDVTVGPRLFLACPMDLEASQACSRTCGITA*CRTLRKQSEKGSRCT 582
           W  L       S SDV   PR   AC  D E +  CS+ C  +  C   R     G RC 
Sbjct: 307 WERLTLQKTLDSMSDVAYCPRCVTACLEDEENNAQCSK-CFFSF-CTRCRYLRHIGERCI 364

Query: 583 VGGDTLRSI 609
              + L S+
Sbjct: 365 SPEEKLLSL 373


>10_01_0297 + 3093179-3093312,3093343-3093478
          Length = 89

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 526 FHTSANT-PD*LPSPWDRL-GTTWVPL*RHLRSVLLGMRSTWTKL 398
           F TSA T P   P+ W R   +TW+   + L++ LLG    WT L
Sbjct: 4   FATSAATIPPVTPTRWGRRRDSTWLLPVKTLQTELLGNEDVWTAL 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,251,702
Number of Sequences: 37544
Number of extensions: 538298
Number of successful extensions: 1594
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)