Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1756X
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068...    27   6.0  
11_01_0691 + 5696230-5696289,5697942-5698025,5699420-5699450,569...    26   7.9  

>06_03_0815 -
           24905641-24905874,24905974-24906044,24906678-24906847,
           24906862-24906955,24907904-24907948,24908599-24909631
          Length = 548

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 171 KLITRDHLVITEATKSGPRRMLNTIIPNELVXPRQQFQEY 290
           +L + D++V  EATK G  ++  T +PN     R +  ++
Sbjct: 284 RLCSFDNMVGLEATKGGRTQLTTTTVPNSAFFRRGEVGDW 323


>11_01_0691 +
           5696230-5696289,5697942-5698025,5699420-5699450,
           5699615-5699739
          Length = 99

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +3

Query: 162 LRAKLITRD---HLVITEATKSGPRRMLNTIIPNELVXPRQQFQEYKLRA-*V*WSKL 323
           L A LIT+    +  ITE  KSG R+++  I+ N  +    Q Q  K +A  + WS+L
Sbjct: 41  LLAPLITQKIAKYAFITEDQKSGFRQIIRNILLNSTINVVSQQQTVKRKATELAWSEL 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,443,465
Number of Sequences: 37544
Number of extensions: 148361
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)