Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1756X
(367 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro... 28 2.4
U53148-2|AAB37078.1| 360|Caenorhabditis elegans Hypothetical pr... 28 2.4
AF016441-6|AAX55687.1| 440|Caenorhabditis elegans Paps (adenosi... 27 3.1
AF016441-4|AAX55686.1| 425|Caenorhabditis elegans Paps (adenosi... 27 3.1
AC087794-4|AAG53704.1| 275|Caenorhabditis elegans Hypothetical ... 27 4.1
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass... 27 5.4
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 27 5.4
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 27 5.4
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z92817-5|CAE17970.2| 305|Caenorhabditis elegans Hypothetical pr... 26 9.5
AL023837-3|CAB63348.2| 283|Caenorhabditis elegans Hypothetical ... 26 9.5
>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger
protein protein.
Length = 1203
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 110 YNLLLKWNYYSCSM*STLHLNIDYFLHKT*SYYCHR 3
YNL + W SCS ST +I+ L K + Y HR
Sbjct: 158 YNLFMHWRT-SCSQTSTTATDIEIQLQKAETPYLHR 192
>U53148-2|AAB37078.1| 360|Caenorhabditis elegans Hypothetical
protein C26F1.6 protein.
Length = 360
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 173 FCTKDSLLLTYLGLHCILSCHYNLLLKWNY 84
+CT++ L+T +G+ I S YNL+ W Y
Sbjct: 119 YCTRNRALIT-VGVVVIFSVAYNLIRIWEY 147
>AF016441-6|AAX55687.1| 440|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform b protein.
Length = 440
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 229 RRGPLFVASVMTR*SRVISFARRTVFY*HILVFIAFCHVTIIF 101
R GP+ A +MT +++S T+ Y H L F+A I+F
Sbjct: 377 RFGPIVFAVIMTI-RQMLSIVLSTIMYGHELTFLAAIGFMIVF 418
>AF016441-4|AAX55686.1| 425|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform a protein.
Length = 425
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 229 RRGPLFVASVMTR*SRVISFARRTVFY*HILVFIAFCHVTIIF 101
R GP+ A +MT +++S T+ Y H L F+A I+F
Sbjct: 362 RFGPIVFAVIMTI-RQMLSIVLSTIMYGHELTFLAAIGFMIVF 403
>AC087794-4|AAG53704.1| 275|Caenorhabditis elegans Hypothetical
protein Y32G9A.5 protein.
Length = 275
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 247 SPMNWXGRDNSFRNTNSEPRYNGANCFRQIGQELRY 354
S + G N+F +T+ EP+Y G++ + Q RY
Sbjct: 115 SAPRYPGNYNAFASTSDEPQYPGSSQYPQGSSAPRY 150
>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform a protein.
Length = 1112
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 122 LSCHYNLLLKWNYYS 78
LSC Y LL WN+YS
Sbjct: 672 LSCSYILLYLWNFYS 686
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
protein C37C3.6c protein.
Length = 1487
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 113 DMTKCNEDQDMSIEDCPSC 169
+ K +E QD +++DCP+C
Sbjct: 686 EAVKPSEKQDCNVDDCPTC 704
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
protein C37C3.6a protein.
Length = 1558
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 113 DMTKCNEDQDMSIEDCPSC 169
+ K +E QD +++DCP+C
Sbjct: 686 EAVKPSEKQDCNVDDCPTC 704
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
protein C37C3.6b protein.
Length = 2167
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 113 DMTKCNEDQDMSIEDCPSC 169
+ K +E QD +++DCP+C
Sbjct: 686 EAVKPSEKQDCNVDDCPTC 704
>Z92817-5|CAE17970.2| 305|Caenorhabditis elegans Hypothetical
protein W08G11.5 protein.
Length = 305
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 366 IRTIVSKFLTYLPKTICSIIPRL 298
I++ + FL Y+P TI S+IP L
Sbjct: 255 IQSAIPCFLMYMPATIMSMIPLL 277
>AL023837-3|CAB63348.2| 283|Caenorhabditis elegans Hypothetical
protein Y37H2C.4 protein.
Length = 283
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 366 IRTIVSKFLTYLPKTICSIIPRL 298
+++ + FL YLP TI I+P L
Sbjct: 208 LQSAIPSFLMYLPATIVYIVPML 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,517,352
Number of Sequences: 27780
Number of extensions: 139122
Number of successful extensions: 323
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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