Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1752
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 2.3
06_03_1132 - 27883151-27883777 30 2.3
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 4.1
01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650... 29 4.1
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 4.1
06_03_0165 - 17399535-17400178,17400378-17400522 29 5.4
09_04_0276 - 16306894-16307526,16307556-16308572 28 7.2
03_05_0999 - 29583959-29584711,29584797-29585021,29585163-295853... 28 7.2
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 28 9.5
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 28 9.5
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 9.5
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 9.5
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 97 DLKSQLEGFNTSCLRDVDTNEKIVL 171
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>06_03_1132 - 27883151-27883777
Length = 208
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/84 (30%), Positives = 36/84 (42%)
Frame = +3
Query: 75 RPPQGRHRPEESARRLQHQLSP*RRHQ*KDCASVC*RRRH*EDPEVFIRRYREV*FEPAE 254
RPP R S RR +H L P D A+ R R V R V +EP+
Sbjct: 120 RPPPPRASRSGSRRRHRHSLLPRASRARGDVAAAASRAR----GAVVAATSRLVRWEPSG 175
Query: 255 HTETQEKNPLPDKDAIEAEKEKNK 326
H E E NP+ ++ + ++ K K
Sbjct: 176 HREAVE-NPMRERRKRKRKRRKKK 198
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 104 RVSSKASTPAVSVTSTPMKRLCFR 175
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>01_06_1361 -
36663859-36663985,36664353-36664543,36664746-36665009,
36665215-36665373,36665476-36665679,36665765-36665983,
36666191-36666322,36666406-36666523,36666670-36666854,
36667263-36667355,36667819-36668008,36668500-36668585,
36668671-36668847,36669141-36669320,36669423-36669623
Length = 841
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 528 WTTQIDLLTSILKYGDTSEIH 466
WT+ +DLLT + K+ D ++H
Sbjct: 515 WTSNLDLLTGLRKFADDEKLH 535
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 59 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 151
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>06_03_0165 - 17399535-17400178,17400378-17400522
Length = 262
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 553 YNGNTAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 660
++G W T G YS D +RLT I SE P
Sbjct: 221 FSGEYRWCYPTPVREGIYSLATDANRLTTIFSEENP 256
>09_04_0276 - 16306894-16307526,16307556-16308572
Length = 549
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 690 YTNYLY*IGLWRPLAVYWRKAR 625
+T Y Y LW P YWR+AR
Sbjct: 111 HTTYNYTDILWSPYGAYWRQAR 132
>03_05_0999 -
29583959-29584711,29584797-29585021,29585163-29585360,
29585472-29586056
Length = 586
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 119 ASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSRSLIRAS*THRDSGEEPASGQRC 298
+S+ + + TST +R F L + +PR L + SR L+R S + E+ A
Sbjct: 14 SSSSSNTATSTSSRR-SFSLFSKNQYCKPRPLRRSSSRLLVRCS-LQQQQEEKAAPAAES 71
Query: 299 YRSGEGKE 322
+ +G G++
Sbjct: 72 HHAGGGQD 79
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 27.9 bits (59), Expect = 9.5
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 44 PAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPL-RRPRSLYS 220
PA T PP RSP+ R S A+ P VT+ L T+P+ RPR L S
Sbjct: 3 PAAATTTPPPSERHRSPKVKRQRSAAAQPLGDVTN-----LLLPSTPTNPITARPRPLPS 57
Query: 221 --TVSRSLIRAS*TH 259
T + S AS +H
Sbjct: 58 DTTAAASTCSASPSH 72
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 27.9 bits (59), Expect = 9.5
Identities = 31/87 (35%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +2
Query: 44 PAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLR-RPRSLYS 220
PA T PP RSP+ R S A+ P VT+ L T+P RPR L S
Sbjct: 3 PAAATTTPPPSERHRSPKVKRQRSAAAQPLGDVTN-----LLLPSTPTNPTTGRPRPLPS 57
Query: 221 --TVSRSLIRAS*THRD-SGEEPASGQ 292
T + S AS +H S ASG+
Sbjct: 58 DTTAAASTCSASPSHTPVSKPSSASGE 84
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 73 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 165
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 73 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 165
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,409,074
Number of Sequences: 37544
Number of extensions: 453434
Number of successful extensions: 1284
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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