Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1752
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    52   5e-07
AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical...    30   1.6  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   6.4  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 27/56 (48%), Positives = 36/56 (64%)
 Frame = +3

Query: 261 ETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 428
           ET EKN LP K+ +  EK+  + ++ IE+FD TKL  T   EK  LP+ D I+QEK
Sbjct: 28  ETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = +3

Query: 258 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 431
           T  +EK  LP  D I+ EK+  +  + I NF    LK TET EKN LP+   + +EK+
Sbjct: 65  TPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +1

Query: 67  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDS 243
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK        IE FDS
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDS 59

Query: 244 SQLN 255
           ++L+
Sbjct: 60  TKLH 63



 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +1

Query: 109 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQL 252
           ++E F+++ L      EKIVLPSA+D+  EK    L D I  F S  L
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENL 100



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 64  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 204
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 360 KLKHTETCEKNPLPTKDVIEQEK 428
           +LK  ET EKN LPTK+ + +EK
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEK 45



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 243 EPAEHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTET 380
           E  + TET EKN LP    +  EK     L    +FD + L H ET
Sbjct: 98  ENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139


>AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical
           protein T12B5.3 protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 528 ITSFIFVFVQWQHCLGNGDVQQPRILFKS*RQVAPYANKQRVDAINRSNTDN 683
           ITSFI  F++ + C+   ++   R+LF     + P+ N + ++ I  S TDN
Sbjct: 131 ITSFIN-FLKAKDCIHVKEIHFNRLLFDDILSILPFFNAKVLENIKLSETDN 181


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 2   FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 181
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P ++      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 182 KTSPLRR 202
             +P+++
Sbjct: 76  TVTPIQQ 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,555,795
Number of Sequences: 27780
Number of extensions: 385981
Number of successful extensions: 1246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)