Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1751
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    81   1e-16
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.7  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   9.7  
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    25   9.7  

>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 37/77 (48%), Positives = 51/77 (66%)
 Frame = +3

Query: 258 GRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKELVKLA 437
           G+ +S +H +   G+     GI+IA LALKHR+ K  + RIV FVGSP+  DEK L++LA
Sbjct: 70  GKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLA 129

Query: 438 KRLKKEKVNCDVVSFGE 488
           KR+KK  V  D++  GE
Sbjct: 130 KRMKKNNVAIDIIHIGE 146



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 34/68 (50%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
 Frame = +1

Query: 58  MVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVE 231
           MVLE+TMI +DNS++M NGD++PTR +AQ+D V+++ + K   NPEN  GL+T+   + +
Sbjct: 1   MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60

Query: 232 VLATLTSE 255
           VL+TLT +
Sbjct: 61  VLSTLTRD 68



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 27/81 (33%), Positives = 38/81 (46%)
 Frame = +2

Query: 494 RKQPPLTTFVNTLNGKDTSTGGSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXX 673
           + +  L  F++  N  D+     HLVS+P       S  L++                  
Sbjct: 148 QNESALQHFIDAANSSDSC----HLVSIPP------SPQLLSDLVNQSPIGQGVVASQNQ 197

Query: 674 FEFGVDPNVDPELALALRVSM 736
           FE+GVDPN+D ELALAL +SM
Sbjct: 198 FEYGVDPNLDVELALALELSM 218


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 239 PHLLASRTY--HVQAPSRPAKR*HQS-IDRNPHCTFSFKTPSGK 361
           PH + S T+   V   S+ +   HQ+    +PH  FSF  P+ K
Sbjct: 90  PHTIHSPTFTLSVSPDSQSSSATHQNDYISSPHADFSFSPPASK 133


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = -1

Query: 592 TASSWHRHKVTSP--SRCVFPI 533
           TA+SWH HK   P  S  V P+
Sbjct: 224 TATSWHAHKFLDPAESGAVIPV 245


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = +3

Query: 357 GKNHKMRIVVFVGSPVNTD------EKELVKLAKRLKKEKVNCDVVS 479
           G  H  R+ V   S  N D      EKELV  A + + +K N  VVS
Sbjct: 56  GNQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,275,040
Number of Sequences: 5004
Number of extensions: 66368
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)