Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1751
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...    82   6e-16
08_02_0470 - 17551368-17552330,17552420-17552920                       30   2.5  
12_02_0434 + 19025539-19026027,19026474-19027553                       29   5.8  
01_06_0065 + 26107522-26107700,26110875-26111253                       29   5.8  
06_01_0370 - 2660569-2661591,2661685-2662260                           28   7.7  

>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 40/66 (60%), Positives = 51/66 (77%), Gaps = 2/66 (3%)
 Frame = +1

Query: 64  LESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVEVL 237
           LE+T+ICVD+S++MRNGD+ PTRLQAQ+DA NLV  +K  SNPEN VG+L +A   V VL
Sbjct: 5   LEATVICVDDSEWMRNGDYPPTRLQAQEDAANLVVGTKMTSNPENTVGVLAMAGDRVRVL 64

Query: 238 ATLTSE 255
              TS+
Sbjct: 65  LAPTSD 70



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 37/82 (45%), Positives = 51/82 (62%)
 Frame = +3

Query: 261 RIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKELVKLAK 440
           + ++ +H ++ +G+ NL   + IA L LK+R  K    RIVVFVGSPV  DEK L  + K
Sbjct: 73  KFLACMHGLEASGEANLTATLNIAELVLKNRPDKRLSQRIVVFVGSPVK-DEK-LETIGK 130

Query: 441 RLKKEKVNCDVVSFGEDSENNP 506
           +LKK  V+ DVV FGE  +  P
Sbjct: 131 KLKKYNVSLDVVEFGESDDEKP 152



 Score = 36.3 bits (80), Expect = 0.029
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 554 GGSHLVSVPAGG---CVVLSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALAL 724
           G SH+V +P G     V+ +  +IT                  +E+ VDPNVDPE A AL
Sbjct: 164 GSSHIVHIPPGEDLRAVLANTPIITGDEGGGAAAGGASR----YEYNVDPNVDPEFAEAL 219

Query: 725 RVS 733
           R+S
Sbjct: 220 RLS 222



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 674 FEFGVDPNVDPELALALRVS 733
           +E+ VDPN DPELA   R++
Sbjct: 237 YEYSVDPNADPELAETFRLA 256


>08_02_0470 - 17551368-17552330,17552420-17552920
          Length = 487

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +3

Query: 204 RIINSCKRRSISHTY*RVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRI 380
           +++  C+ +  ++ +   GR+  K+  VQ   D  LL    I+H+ + H   + H+M I
Sbjct: 84  QLVTCCQHKGPTYRFVMAGRLADKIRSVQARIDSYLLFLPLISHIDIIHCLDQIHRMLI 142


>12_02_0434 + 19025539-19026027,19026474-19027553
          Length = 522

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +3

Query: 207 IINSCKRRSISHTY*RVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIV- 383
           ++ SC+ +S+ H     GR   +   VQ   D  LL    I+H+ +  R  + +++ +  
Sbjct: 87  LVMSCQEKSVMHRLVMAGRQAERFREVQSRIDSYLLVFPFISHIDITRRLDRIYRVLLPN 146

Query: 384 --VFVGSPVNTDEKELVKLAKRLKKEKV 461
               V SP    +   ++LA+   +E V
Sbjct: 147 DHTPVPSPSAGSQTRELELAEEAAQEVV 174


>01_06_0065 + 26107522-26107700,26110875-26111253
          Length = 185

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 565 PCVCASWRLCC 597
           PC C +WRLCC
Sbjct: 20  PCPCPAWRLCC 30


>06_01_0370 - 2660569-2661591,2661685-2662260
          Length = 532

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 207 IINSCKRRSISHTY*RVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHR 353
           ++ SC+ RS ++ +   GR+  +   VQ   D  L+    IAH+ +  R
Sbjct: 87  LVASCQGRSAAYRFVMAGRLADRFRDVQSKIDSYLIVFPFIAHIDITRR 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,245,703
Number of Sequences: 37544
Number of extensions: 437705
Number of successful extensions: 883
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)