Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1751
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067211-11|AAK66019.1| 346|Caenorhabditis elegans Proteasome r... 108 4e-24
Z81076-7|CAB03058.1| 411|Caenorhabditis elegans Hypothetical pr... 31 0.99
Z81076-6|CAB03054.1| 387|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z81076-5|CAB03055.1| 389|Caenorhabditis elegans Hypothetical pr... 30 2.3
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 29 3.0
U20862-2|AAK29864.1| 179|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF248541-1|AAF63761.1| 179|Caenorhabditis elegans cysteine-rich... 28 7.0
X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein. 28 9.2
U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory ... 28 9.2
U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein. 28 9.2
AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical ... 28 9.2
AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical ... 28 9.2
>AF067211-11|AAK66019.1| 346|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 10 protein.
Length = 346
Score = 108 bits (260), Expect = 4e-24
Identities = 48/82 (58%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = +3
Query: 258 GRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDE-KELVKL 434
GR+M K H ++P G N + GI+IAHLALKHRQ +NHKMR+V+F+GSP+ E ELVK+
Sbjct: 69 GRLMMKNHSIEPFGKCNFIAGIKIAHLALKHRQNRNHKMRVVLFIGSPLEEIEMNELVKI 128
Query: 435 AKRLKKEKVNCDVVSFGEDSEN 500
AK++KKEKV CDV+ FGE+ +
Sbjct: 129 AKKMKKEKVLCDVIMFGENESD 150
Score = 100 bits (240), Expect = 1e-21
Identities = 48/67 (71%), Positives = 59/67 (88%), Gaps = 1/67 (1%)
Frame = +1
Query: 58 MVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN-VEV 234
MV ESTMICVDNS+YMRNGDF PTRLQ+QQDAVNLV K R+NPEN VG+L++AN V+V
Sbjct: 1 MVQESTMICVDNSEYMRNGDFQPTRLQSQQDAVNLVTQCKLRANPENAVGILSMANSVQV 60
Query: 235 LATLTSE 255
L++L++E
Sbjct: 61 LSSLSTE 67
Score = 44.8 bits (101), Expect = 7e-05
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +2
Query: 512 TTFVNTLNGKDTSTGGSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXXF---EF 682
+TFV+TLNGK+ S GS L+ VP G L++AL+ S F
Sbjct: 156 STFVDTLNGKEGS--GSSLIVVPQGSS--LTDALLQSSVCKNEDGQAAFGGGGNGMDNAF 211
Query: 683 GVDPNVDPELALALRVSM 736
G+D DP+LALALRVSM
Sbjct: 212 GMDVENDPDLALALRVSM 229
>Z81076-7|CAB03058.1| 411|Caenorhabditis elegans Hypothetical
protein F35C5.6 protein.
Length = 411
Score = 31.1 bits (67), Expect = 0.99
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +3
Query: 264 IMSKLHRVQPNGDINLLTGIRIAHLALKHRQGK----NHKMRIVVFVGSPVNTDEKELVK 431
+ S L++V + D L GI A L+ + N+K +VV+ + E + +
Sbjct: 133 VFSTLNQVSNSDDSFLAKGIGAAENVLQSGRTNGVRSNYKRLVVVYASAYKGEGELDPIP 192
Query: 432 LAKRLKKEKVNCDVVSFGEDSE 497
+A RLK V V+F +D +
Sbjct: 193 VADRLKSSGVVVSTVAFDQDGD 214
>Z81076-6|CAB03054.1| 387|Caenorhabditis elegans Hypothetical
protein F35C5.5b protein.
Length = 387
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 300 DINLLTGIRIAHLAL----KHRQGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNC 467
D+ L GI A L K+ KN+K ++V+ + + E++ +A+RLK V+
Sbjct: 121 DVFLAKGIGAAEQLLAAGRKNNTRKNYKQMVIVYASAYNDEGEEDPRPIAERLKASGVSI 180
Query: 468 DVVSFGEDSE 497
V+F + +
Sbjct: 181 ATVAFDQTGD 190
>Z81076-5|CAB03055.1| 389|Caenorhabditis elegans Hypothetical
protein F35C5.5a protein.
Length = 389
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 300 DINLLTGIRIAHLAL----KHRQGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNC 467
D+ L GI A L K+ KN+K ++V+ + + E++ +A+RLK V+
Sbjct: 121 DVFLAKGIGAAEQLLAAGRKNNTRKNYKQMVIVYASAYNDEGEEDPRPIAERLKASGVSI 180
Query: 468 DVVSFGEDSE 497
V+F + +
Sbjct: 181 ATVAFDQTGD 190
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 438 KRLKKEKVNCDVVSFGEDSENNPL*LPLSTH*MG---KTHRLGEVTLCLCQLEAVLCFL 605
+R K EK D +DS PLS++ + K++ +V CLC+ CFL
Sbjct: 846 QRAKNEKARRDFYHSSQDSAETVQPTPLSSNLVSFRQKSYPSRKVCACLCESVCAFCFL 904
>U20862-2|AAK29864.1| 179|Caenorhabditis elegans Hypothetical
protein W06E11.5a protein.
Length = 179
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 785 VVC*RRDSLLDVAFVLPSTHVELMRALGLHWDLLQIRKETNQSQK 651
V+C R ++L + L +V L LGLHW L R+ T S +
Sbjct: 117 VLCLNRRTVLALEKCLDHENVSLYHKLGLHWSL--ARRPTEPSDR 159
>AF248541-1|AAF63761.1| 179|Caenorhabditis elegans cysteine-rich
hydrophobic protein protein.
Length = 179
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 785 VVC*RRDSLLDVAFVLPSTHVELMRALGLHWDLLQIRKETNQSQK 651
V+C R ++L + L +V L LGLHW L R+ T S +
Sbjct: 117 VLCLNRRTVLALEKCLDHENVSLYHKLGLHWSL--ARRPTEPSDR 159
>X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein.
Length = 498
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 496 KTTPFDYLCQH---TKWERHIDWGKSPCVCASWRLCCAF*G 609
+TT D +H TK + +SPC+CA R C A+ G
Sbjct: 69 ETTECDTCNEHAFCTKDNKTAKGHRSPCICAPSRFCVAYNG 109
>U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory
abnormality protein4 protein.
Length = 768
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 496 KTTPFDYLCQH---TKWERHIDWGKSPCVCASWRLCCAF*G 609
+TT D +H TK + +SPC+CA R C A+ G
Sbjct: 339 ETTECDTCNEHAFCTKDNKTAKGHRSPCICAPSRFCVAYNG 379
>U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein.
Length = 768
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 496 KTTPFDYLCQH---TKWERHIDWGKSPCVCASWRLCCAF*G 609
+TT D +H TK + +SPC+CA R C A+ G
Sbjct: 339 ETTECDTCNEHAFCTKDNKTAKGHRSPCICAPSRFCVAYNG 379
>AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical
protein ZC123.4b protein.
Length = 536
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -1
Query: 700 YIGIYSKFERRQTRARRACSITTYQRTCYQSLRKHNTASSWHRHKVTSPSR 548
+IG++ E + R +CS++ ++R ++ + HR SP R
Sbjct: 8 HIGVWFGLEEAERPMRASCSLSMIHHPQLTAVRSSKSSENLHRITTMSPQR 58
>AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical
protein ZC123.4a protein.
Length = 534
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -1
Query: 700 YIGIYSKFERRQTRARRACSITTYQRTCYQSLRKHNTASSWHRHKVTSPSR 548
+IG++ E + R +CS++ ++R ++ + HR SP R
Sbjct: 8 HIGVWFGLEEAERPMRASCSLSMIHHPQLTAVRSSKSSENLHRITTMSPQR 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,170,717
Number of Sequences: 27780
Number of extensions: 378807
Number of successful extensions: 902
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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