Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1750
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   1.6  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    27   2.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   2.7  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    27   3.6  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   4.8  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.8  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   8.3  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 244  HLSDQPQRQMFCSMYKFLYYIAVSCIVRLLFHLMFKRLL 360
            H   QP R++ C M +  ++ A   +  LL  LM   LL
Sbjct: 1756 HALSQPSRELICKMTELNFFAADFFLCHLLLFLMLPVLL 1794


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 527 HG*QIKPTNKVSKLDPFDRKCSAAAGSVEVREAFDL 420
           H  +++   +++ L P    CSA AGS EV + +DL
Sbjct: 61  HTLKLQLIKRITVLHPAISHCSACAGSKEVLQTWDL 96


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
 Frame = +1

Query: 253  DQPQRQMFCSMYKFLYYIAVSCIVRLLFHLMFK---RLL--FRDLILHSDSNCTVSRAP 414
            ++ Q+ +   +  F Y+I V+ + + LF+L+ +    LL  FRD+++   ++ T+ R P
Sbjct: 981  EKEQQSLLAELDDFFYWIYVNLLPKPLFYLLSRLWFGLLETFRDILVPPVTDSTLRRIP 1039


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 385 DSNCTVSRAPSVKSKASRTSTDPAAAEHLRSNGSSLETLLVGFI 516
           D +  + +  S  + A R   +  AAEHLRS    +E LL+G +
Sbjct: 609 DGDNAIQQIRSDIALAIRVFGEYMAAEHLRSTFEPIEKLLLGML 652


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 142 VSSGDHTLSRSDLMYTYHSLSDWVS 68
           VSS   +LS SD + +Y SLSD VS
Sbjct: 65  VSSSSWSLSSSDSIMSYDSLSDDVS 89


>SPBC28E12.03 |rga4||GTPase activating protein
            Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 440  PQLIRRQQNTYDRMDRV*KLYWLALFVTHVESSY 541
            P LIR   N+ D +D   K Y LA  + HV   +
Sbjct: 899  PTLIRDPDNSRDVIDMTVKNYSLAFLIDHVHEVF 932


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 415 SEPATQYSWSPSVKSNHGKAAV*TLNEKVI*QYNLPLYNTE 293
           S P+T + WSP    +  K A   LNE  I  Y+ PLY  E
Sbjct: 226 SSPSTIW-WSP----DSDKIAFLKLNESEIPTYHYPLYTAE 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,150
Number of Sequences: 5004
Number of extensions: 59962
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)