Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1750
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0198 + 1429396-1430640                                           29   3.8  
02_04_0109 + 19812544-19814474,19814574-19814607                       28   6.6  
12_01_0068 - 580870-581287,581440-582002                               28   8.7  
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756...    28   8.7  
04_01_0025 - 348326-348566,349750-350912                               28   8.7  

>05_01_0198 + 1429396-1430640
          Length = 414

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 58  RFIHSPSHSKNDMYT*DQIDLEYDPLKIRAPAQSQAGPGGPRDPHVNILIIFLIKQYRYR 237
           RF++    S   +Y+  +IDL   PL    PA + A   GPRD     L +   ++Y ++
Sbjct: 6   RFVNLLVESSGGLYSLRRIDLSRHPLFYPTPAAAAA--AGPRD-----LRVQREEEYEFQ 58

Query: 238 TAHLSDQPQRQ 270
              L+D  +R+
Sbjct: 59  WPKLNDDDERR 69


>02_04_0109 + 19812544-19814474,19814574-19814607
          Length = 654

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 379 HSDSNCTVSRA--PSVKSKASRTSTDPAAAEHLRSNG-SSLETLLV 507
           HS S C+ SRA  PS  + +S  S  P   E LRS   S++  LLV
Sbjct: 395 HSTSKCSRSRAHSPSHSAHSSSKSFQPTQPEGLRSMAVSNVSPLLV 440


>12_01_0068 - 580870-581287,581440-582002
          Length = 326

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 379 HSDSNCTVSRAPSVKSKASRTSTDPA---AAEHLRSNGSS 489
           HS++  + SR  S  + AS   +DPA   AA+H  +  SS
Sbjct: 240 HSEATASSSRIASASASASACHSDPAATIAADHSEATASS 279


>06_03_1344 -
           29472139-29473292,29474478-29475386,29475504-29475618,
           29476017-29476218,29477177-29477296,29477431-29477582,
           29478177-29478461
          Length = 978

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 364 RDLILHSDSNCTVSRAPSVKSKASRTSTDPAAAEHLRSNGSSLE 495
           +D   +SDS+ + S   S +S+  R  +D ++ EH R +G S E
Sbjct: 502 KDEQYYSDSSSSRSNRHSRRSREKRYYSDSSSPEHNRHSGRSKE 545


>04_01_0025 - 348326-348566,349750-350912
          Length = 467

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 433 SRTSTDPAAAEHLRSNGSSLETLLVGFICYPC 528
           +   + PAA   LR N   ++  L+G +C+ C
Sbjct: 5   AEVESSPAATGKLRYNSPLVQVSLIGLVCFCC 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,729,092
Number of Sequences: 37544
Number of extensions: 394493
Number of successful extensions: 922
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)