Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1749
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    57   3e-09
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    30   0.42 
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.97 
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   1.7  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    27   3.0  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.1  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 23/51 (45%), Positives = 36/51 (70%)
 Frame = +1

Query: 103 LRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLGCRGALCLKKAKV 255
           + GYL KWTNY  G++ R+  L +  LSYYKN+ +++  CRG++ LK A++
Sbjct: 257 MSGYLKKWTNYKSGYKLRWFTLNNGVLSYYKNQDDASSACRGSINLKLARL 307


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 94  TPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYY 192
           T +  G++ K ++    W+ R+ VLK + LSYY
Sbjct: 698 TADCHGWMRKRSDRYGVWKSRYFVLKGTRLSYY 730


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 17/33 (51%), Positives = 17/33 (51%)
 Frame = -1

Query: 445 AEPCL*RPPPFELLSELVPYPDSTLKDSRISIH 347
           A  CL    P EL SELV  P S LKD    IH
Sbjct: 29  ARKCLDDMKPIELPSELVESPLSMLKDVATLIH 61


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 482 YTSPHRENHELETYNELLSKQAIQLQQYFDMCIDSYPK 595
           +TSP +    LE  N  +++   ++  Y D+C+D + K
Sbjct: 555 HTSPTQHKAVLEFLNSCINRCISRVFAYLDVCVDCFKK 592


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 458 VYRVTRSLYTSPHRENHELETYNELLSKQAIQLQQYFDMCI 580
           +YR    L      +  EL   NE + ++A +L++ +DMCI
Sbjct: 131 IYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCI 171


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/66 (24%), Positives = 25/66 (37%)
 Frame = +2

Query: 440 FCHFTTVYRVTRSLYTSPHRENHELETYNELLSKQAIQLQQYFDMCIDSYPKIDDANDAI 619
           +CHF  + +V R+L    +    E       +    I   +YF     SY   D     +
Sbjct: 583 YCHFKLLKKVNRNLQIKTNYPTQEFHLLRPTIKILQISKHEYFLHFSSSYIFNDARERDV 642

Query: 620 DAVKLA 637
             VKL+
Sbjct: 643 YGVKLS 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,183
Number of Sequences: 5004
Number of extensions: 48027
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)