Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1749
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 41 0.001
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 41 0.001
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646... 39 0.004
10_01_0016 + 190329-191210,206896-207033,208029-208103,208533-20... 34 0.11
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 34 0.11
07_01_0700 + 5280650-5281757,5282509-5282519,5282872-5282967 34 0.11
01_06_1395 + 37010446-37010895 33 0.19
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325... 32 0.58
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 30 1.8
04_01_0426 - 5620980-5621114,5622675-5622886,5623290-5623412,562... 29 3.1
08_02_0277 - 15226062-15226169,15227075-15227203,15227416-152275... 29 5.4
05_01_0066 - 465526-466107,466541-466741 29 5.4
04_03_0614 + 18038848-18040287 28 7.2
03_01_0467 + 3608250-3608541,3609276-3609356,3609909-3610069 28 7.2
02_05_1156 - 34528204-34529411,34529982-34530122,34530214-34531072 28 7.2
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473... 28 9.5
03_01_0168 + 1382531-1383931,1384028-1384150 28 9.5
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 88 GGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYK 195
G + G L KWTNY GW++R+ L D LSY K
Sbjct: 43 GAAVAVAGVLHKWTNYGRGWRERWFSLHDGVLSYSK 78
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 103 LRGYLSKWTNYIHGWQDRFIVLKDSTLSYYK 195
+ G L KW NY GW+ R+ L D LSYYK
Sbjct: 89 ISGILYKWVNYGRGWRPRWFALHDGVLSYYK 119
>12_01_1055 -
10861665-10861829,10862827-10863171,10864374-10864682,
10864813-10864968,10865669-10866117,10869275-10869359,
10869944-10870300,10870672-10871076
Length = 756
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +1
Query: 109 GYLSKWTNYIHGWQDRFIVLKDSTLSYYK 195
G L KW NY GW+ R+ VL+ LSYYK
Sbjct: 58 GVLHKWVNYGKGWRLRWFVLEGGVLSYYK 86
>10_01_0016 +
190329-191210,206896-207033,208029-208103,208533-208639,
209193-209250,210183-210242,210320-210394,210504-210641,
211766-211820,212134-212256,212645-212883
Length = 649
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 458 VYRVTRSLYTSPHRENHELETYNELLSKQAIQ-LQQYFDMCIDSYPKIDDANDAIDAVKL 634
VY+VT+++Y SP R N L+ ++A++ + Y ++C +DD +D DAV L
Sbjct: 418 VYKVTKTVYASPSRVNFHLDR------RKAVETVPAYPNICFS----VDDFDDTFDAVVL 467
Query: 635 AD 640
+D
Sbjct: 468 SD 469
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 458 VYRVTRSLYTSPHRENHELETYNELLSKQAIQ-LQQYFDMCIDSYPKIDDANDAIDAVKL 634
VY+VT+++Y SP R N L+ ++A++ + Y ++C +DD +D DAV L
Sbjct: 463 VYKVTKTVYASPSRVNFHLDR------RKAVETVPAYPNICFS----VDDFDDTFDAVVL 512
Query: 635 AD 640
+D
Sbjct: 513 SD 514
>07_01_0700 + 5280650-5281757,5282509-5282519,5282872-5282967
Length = 404
Score = 34.3 bits (75), Expect = 0.11
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 64 SDSSDLEEGGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYY--KNELESNLGCRGALC 237
SD S LE G P KW+ + G +R + + TLSY+ N+L + G +G LC
Sbjct: 221 SDPSFLERGCMPSFDFATEKWSVALQGPLNRILEESNGTLSYHDLANQLMLS-GLKGTLC 279
Query: 238 LKKAKVSLTSLMTVDSMFLLATAFGT 315
TVD FL + GT
Sbjct: 280 TSHWN---DQFYTVDLWFLTDSEKGT 302
>01_06_1395 + 37010446-37010895
Length = 149
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 94 TPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKN 198
+PE G+L+K YI W+ R+ VLK L ++K+
Sbjct: 21 SPERAGWLTKQGEYIKTWRRRWFVLKQGRLFWFKD 55
>10_08_0877 +
21230447-21230815,21231855-21232208,21232417-21232504,
21232844-21233268,21233477-21233632,21233849-21234016,
21234170-21234310,21234393-21234629,21234710-21234823,
21235096-21235272
Length = 742
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 109 GYLSKWTNYIHGWQDRFIVLKDSTLSYYK 195
G L KWTN GW+ R+ ++ L+Y K
Sbjct: 52 GVLYKWTNIGKGWRPRWFAIRGGVLAYSK 80
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 100 ELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKN 198
E G+L+K YI W+ R+ VLK L ++K+
Sbjct: 39 ERTGWLNKQGEYIKTWRRRWFVLKQGRLFWFKD 71
>04_01_0426 -
5620980-5621114,5622675-5622886,5623290-5623412,
5623705-5623759,5624530-5624676,5624841-5624915,
5624987-5625046,5625334-5625519
Length = 330
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 467 VTRSLYTSPHRENHELETYNELLSKQAIQ-LQQYFDMCIDSYPKIDDANDAIDAVKLAD 640
VT+++Y SP R N L+ ++A++ + Y ++C IDD +D DAV L+D
Sbjct: 63 VTKTVYASPSRVNFHLDR------RKAVETVPAYPNICFS----IDDFDDTFDAVVLSD 111
>08_02_0277 -
15226062-15226169,15227075-15227203,15227416-15227583,
15227665-15228123,15228865-15229008
Length = 335
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = +2
Query: 467 VTRSLYTSPHRENHELETYNELLSKQAIQLQQYFDMCIDSYPKIDDANDAIDAVKL 634
+ R+ S + + + ++ +++ L A L + + +S+ KID +N++ +AVKL
Sbjct: 185 IARTKRESDNAKKYAVQGFSKSLLDVADNLSRASSVVKESFSKIDTSNESAEAVKL 240
>05_01_0066 - 465526-466107,466541-466741
Length = 260
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 319 ERLIQRRNSNGLIF*SLSKLNQGTVQVQIVAQMEEVFKGMVLPLHYSLQGHTVTLH 486
E L R + L+F + K +GTV+++I++ +VF G + ++ H V L+
Sbjct: 126 ETLESRLSEVELVFNCVKKALEGTVEIKILSD-AQVFHGKITACTTNVPNHAVLLY 180
>04_03_0614 + 18038848-18040287
Length = 479
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 163 VLKDSTLSYYKNELESNLGCRGALCLKKAKVSLTSLMTVDSMFLLATAFG 312
+L D TLS+ ++ + C C K + L S+ V S LL AFG
Sbjct: 96 LLNDITLSFCSKINDAGIACL-TYCKKLMSLKLNSIPEVTSSGLLMVAFG 144
>03_01_0467 + 3608250-3608541,3609276-3609356,3609909-3610069
Length = 177
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 668 EVRAT-STSFRATCGATVATLQHCVELLRRRENRRD 772
++ AT + + + CGAT A + HC +LL N +D
Sbjct: 73 KINATLALALPSACGATHANVSHCPQLLHIPPNSKD 108
>02_05_1156 - 34528204-34529411,34529982-34530122,34530214-34531072
Length = 735
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +1
Query: 292 LLATAFGT*--ERLIQRRNSNGLIF*SLSKLNQGTVQVQIVAQMEEVFKGMVLPL 450
LLA AFG R I+ R +N ++ K N+G + Q+V+Q ++ + M++PL
Sbjct: 347 LLAMAFGAVFLTRKIKNRRAN-MLRQMFFKQNRGHLLQQLVSQNTDIAERMIIPL 400
>06_03_0576 -
22443668-22444146,22446239-22446393,22447251-22447331,
22448475-22448618,22449670-22449695,22449748-22449811,
22449905-22449996,22450550-22450780,22451238-22451678,
22451754-22452293
Length = 750
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 231 LMSEKS*SKPHEFDD---CRFDVSVSDCVWYLRASNPEEKQQWIDILESFKV 377
L+ + KPH D CRF D V +LR+ PE +Q I L+ F V
Sbjct: 60 LLDQMQVLKPHPARDRDLCRFHAD--DYVAFLRSVTPETQQDQIRALKRFNV 109
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 545 AIQLQQYFDMCIDSYPKIDDANDAIDAVKLADGNDLRVHAG 667
A QL D CID YP + ++D I A G L H G
Sbjct: 240 AAQLAHMQDGCIDRYPALYGSDDRIHACVAELGVPLTRHLG 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,019,391
Number of Sequences: 37544
Number of extensions: 299264
Number of successful extensions: 924
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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