Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1749
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-5|CAB02094.2|  573|Caenorhabditis elegans Hypothetical pr...    61   1e-09
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    59   4e-09
AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol bin...    44   9e-05
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    32   0.52 
Z97190-2|CAM06586.1|  650|Caenorhabditis elegans Hypothetical pr...    31   0.69 
Z66564-7|CAA91472.2|  650|Caenorhabditis elegans Hypothetical pr...    31   0.69 
Z75533-5|CAA99818.1|  188|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPas...    28   8.5  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    28   8.5  

>Z79754-5|CAB02094.2|  573|Caenorhabditis elegans Hypothetical
           protein F25H2.6 protein.
          Length = 573

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 22/50 (44%), Positives = 35/50 (70%)
 Frame = +1

Query: 109 GYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLGCRGALCLKKAKVS 258
           G + KWTNY++GWQDR+  + +  L YY ++ E + GCRG++ LK A ++
Sbjct: 11  GVMKKWTNYVNGWQDRYFEITEGNLVYYLSKAEKSHGCRGSIFLKSAIIA 60



 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 261 HEFDDCRFDVSVSD-CVWYLRASNPEEKQQWI 353
           HEFD+  F +S+ +  VWYL+A N + K  W+
Sbjct: 62  HEFDENEFSISMGENVVWYLKAENSQSKLLWM 93


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
 Frame = +1

Query: 58  TVSDSSDLEEGGTPELRGYLSKWTNYIHGWQDRFIVL-KDSTLSYYKNELESNLGCRGAL 234
           ++S  ++ E   + E  G+L+KWTNY+ G++ R+ VL  ++TLSYY+N  E    CRG++
Sbjct: 48  SLSSINNFEHLASVEKAGWLNKWTNYLKGYRQRWFVLDSNATLSYYRNPSEVGHTCRGSI 107

Query: 235 CLKKAKV 255
            L++A+V
Sbjct: 108 NLQEARV 114


>AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol
           binding protein (osbp)related protein 4, isoform a
           protein.
          Length = 676

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 103 LRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLG-CRGALCLKKAKVSL 261
           + G LSKWTN +HGWQ R+  +++ TL YY +  +   G  RG + L  A V +
Sbjct: 1   MEGPLSKWTNMVHGWQYRWFKIENDTLLYYTSREKMLKGQQRGQIRLTGAVVGI 54


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 20  FHTRNTI*LTKTSQ-SAIVLI*KRAELLNFADT*ANGQTIY 139
           FH +  + L+ ++  S I++I +RA+ + F DT  +GQT+Y
Sbjct: 354 FHVKTHLLLSLSNAFSIIIIIVQRAQAVGFTDTSGDGQTVY 394


>Z97190-2|CAM06586.1|  650|Caenorhabditis elegans Hypothetical
           protein F52D10.6 protein.
          Length = 650

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 76  DLEEGGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELE 207
           D+ +  T  + GYL +      GWQD ++V+   TL +Y+N  E
Sbjct: 531 DVNKMITNTMCGYLKRKLRNSSGWQDLWVVMCCHTLYFYRNHNE 574


>Z66564-7|CAA91472.2|  650|Caenorhabditis elegans Hypothetical
           protein F52D10.6 protein.
          Length = 650

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 76  DLEEGGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELE 207
           D+ +  T  + GYL +      GWQD ++V+   TL +Y+N  E
Sbjct: 531 DVNKMITNTMCGYLKRKLRNSSGWQDLWVVMCCHTLYFYRNHNE 574


>Z75533-5|CAA99818.1|  188|Caenorhabditis elegans Hypothetical
           protein C54G4.6 protein.
          Length = 188

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 470 TRSLYTSPHRENHELETYNELLSKQAIQLQQYFDMCIDSYPK 595
           T ++YT      HE + Y E++ K  +      D  ID Y K
Sbjct: 98  THNVYTGMALHYHETDQYEEIIEKTIVHFGDIPDRVIDEYVK 139


>Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical
           protein F56H11.3 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -3

Query: 131 FVHLLRYP----RSSGVPPSSKSELSLTVMFSSIILCYVYG 21
           FVH   YP    RS  +   +K  +++TV+  +  +C++YG
Sbjct: 208 FVHAFMYPYYFTRSMNIKVPAKISMAVTVLQLTQFMCFIYG 248


>Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical
           protein K11D9.2b protein.
          Length = 1004

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 214 LGCRGALCLKKAKVSLTSLMTVDSMFLLATAFG 312
           LGC   +C  K     T+ M+V  MF+   A G
Sbjct: 344 LGCTSVICSDKTGTLTTNQMSVSKMFIAGQASG 376


>Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical
           protein K11D9.2a protein.
          Length = 1059

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 214 LGCRGALCLKKAKVSLTSLMTVDSMFLLATAFG 312
           LGC   +C  K     T+ M+V  MF+   A G
Sbjct: 344 LGCTSVICSDKTGTLTTNQMSVSKMFIAGQASG 376


>AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1059

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 214 LGCRGALCLKKAKVSLTSLMTVDSMFLLATAFG 312
           LGC   +C  K     T+ M+V  MF+   A G
Sbjct: 344 LGCTSVICSDKTGTLTTNQMSVSKMFIAGQASG 376


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 131 FVHLLRYPRSSGVPPSSKSELSLTVMFSSIILCYVYGSVNI 9
           FV    YP SSGVP  S S   L ++F + +L  +  ++NI
Sbjct: 869 FVSKNSYPISSGVPQGSVSGPLLFILFINNLLIDLAPTINI 909


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,912,617
Number of Sequences: 27780
Number of extensions: 272141
Number of successful extensions: 925
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)