Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1748
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      28   1.4  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    26   4.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   5.7  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    25   9.9  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 103 PRTTMTHQNHQTNGASLEDCHTNFFALVXHFYIDERTRMYFSFEIVT 243
           P    +H N+  +  ++ DCHT    LV H  I++R + + S ++ T
Sbjct: 137 PEELNSHVNYP-DVRNVYDCHTGLQPLVDHDCIEDRQKTFASKQLPT 182


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 556 P*EATAHRGHLNSPGRNADRNAFARLVSQVE 648
           P  AT H GH+ S G   D+N+   ++  +E
Sbjct: 215 PFSATYHNGHVYSRGAADDKNSVVAILEALE 245


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +2

Query: 110 LP*RIKITKQTVQVSRIATQTSSPW*XTFTLMKELVCTFLSKSL 241
           LP + K    +V  S  +T    PW        +LVCTFL K L
Sbjct: 436 LPYQGKSRASSVVTSSKSTCILPPWILFSDSFNQLVCTFLGKLL 479


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 505 DYVELLTHQMSTHSASEP*EATAHRGHL 588
           ++VEL+   ++ H+  E    +AH GHL
Sbjct: 259 EFVELMRLYLTIHADHEGGNVSAHTGHL 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,629
Number of Sequences: 5004
Number of extensions: 48801
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)