Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1748
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1705 + 39312648-39314246                                         29   3.4  
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524...    28   7.8  

>01_06_1705 + 39312648-39314246
          Length = 532

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 289 WTRSQTIVDFTGSHTS*RFRKKSTYEFFHQCK 194
           W+ +Q  VD  GS  + R RKK  ++    CK
Sbjct: 82  WSPAQAAVDVVGSSETSRVRKKRFWDVLESCK 113


>02_01_0702 -
           5243064-5243159,5243280-5243331,5243453-5243526,
           5243633-5243683,5243840-5243899,5244131-5244232,
           5244416-5244502,5244759-5244803,5245241-5245283,
           5245371-5245499,5245599-5245676,5245762-5245811,
           5246026-5246108,5246780-5246843,5246953-5247066,
           5247558-5247623,5247713-5247778,5248405-5248446,
           5248590-5248652,5248744-5248794
          Length = 471

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 496 DTTDYVELLTHQMSTHSASEP*EATAHRGHLNSPG 600
           D    +EL+   ++ H+  E    +AH GHL +PG
Sbjct: 253 DDPKMLELMRLYITIHTDHEGGNVSAHTGHLENPG 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,876,104
Number of Sequences: 37544
Number of extensions: 299103
Number of successful extensions: 549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)