Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1748
         (673 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130422-1|AAI30423.1| 2210|Homo sapiens mediator complex subuni...    33   0.93 
AY338463-1|AAR08418.1| 2210|Homo sapiens thyroid hormone recepto...    33   0.93 
AF515599-1|AAQ08182.1| 2210|Homo sapiens PROSIT240 protein.            33   0.93 
AF117754-1|AAD22032.1| 2174|Homo sapiens thyroid hormone recepto...    31   3.8  

>BC130422-1|AAI30423.1| 2210|Homo sapiens mediator complex subunit
           13-like protein.
          Length = 2210

 Score = 33.1 bits (72), Expect = 0.93
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 127 NHQTNGASLEDCHTNFFAL 183
           N   NGASLEDCH+N F+L
Sbjct: 6   NWVANGASLEDCHSNLFSL 24


>AY338463-1|AAR08418.1| 2210|Homo sapiens thyroid hormone
           receptor-associated protein complex 240 kDa
           component-like protein.
          Length = 2210

 Score = 33.1 bits (72), Expect = 0.93
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 127 NHQTNGASLEDCHTNFFAL 183
           N   NGASLEDCH+N F+L
Sbjct: 6   NWVANGASLEDCHSNLFSL 24


>AF515599-1|AAQ08182.1| 2210|Homo sapiens PROSIT240 protein.
          Length = 2210

 Score = 33.1 bits (72), Expect = 0.93
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 127 NHQTNGASLEDCHTNFFAL 183
           N   NGASLEDCH+N F+L
Sbjct: 6   NWVANGASLEDCHSNLFSL 24


>AF117754-1|AAD22032.1| 2174|Homo sapiens thyroid hormone
           receptor-associated protein complex component TRAP240
           protein.
          Length = 2174

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +1

Query: 139 NGASLEDCHTNFFAL 183
           NGASLEDCH N F L
Sbjct: 8   NGASLEDCHCNLFCL 22


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,815,601
Number of Sequences: 237096
Number of extensions: 1737634
Number of successful extensions: 5833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5828
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)