Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1748
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 221 TFLSKSLRSV*PCEVHYC 274
           ++L++S RS+ PC   YC
Sbjct: 70  SYLAESSRSIDPCASKYC 87


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 470 QTGVISCFCVKGLILK 423
           +  V  C CVKG++LK
Sbjct: 603 KVNVAGCRCVKGILLK 618


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 240 NDFERKVHTSSFINVKVXYQG 178
           ND+  +++ S+F+N+   Y G
Sbjct: 126 NDYINRLNYSAFVNLTAYYDG 146


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 619 HYGPRYGQVNLNDLYGPW 566
           ++ PRYG  N+N     W
Sbjct: 218 YFDPRYGNYNINGFNFQW 235


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 505 LWCRENDARMTN 470
           LWC +ND +M +
Sbjct: 9   LWCPDNDGKMVD 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,010
Number of Sequences: 438
Number of extensions: 3558
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)