Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1746
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 181 1e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 108 8e-25
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 105 6e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 88 2e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 1e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 2e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 47 3e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 42 1e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.14
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.77
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.77
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 3.1
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 4.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.5
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 9.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 181 bits (440), Expect = 1e-46
Identities = 82/93 (88%), Positives = 85/93 (91%)
Frame = +2
Query: 227 GKAPPSGRDVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 406
G+ G VGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR 95
Query: 407 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 505
VAPEEHP LLTEAPLNPK+NREKMTQI+FETFN
Sbjct: 96 VAPEEHPCLLTEAPLNPKSNREKMTQIIFETFN 128
Score = 164 bits (398), Expect = 1e-41
Identities = 80/91 (87%), Positives = 85/91 (93%), Gaps = 1/91 (1%)
Frame = +1
Query: 511 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 690
A YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLM
Sbjct: 131 AFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLM 190
Query: 691 KILTERGYSFTTTAEREIVRDIKES-CATSL 780
KIL ERGY+F+TTAEREIVRDIKE C +L
Sbjct: 191 KILMERGYTFSTTAEREIVRDIKEKLCYVAL 221
Score = 89.8 bits (213), Expect = 4e-19
Identities = 38/43 (88%), Positives = 42/43 (97%)
Frame = +3
Query: 126 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 254
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+M
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIM 44
Score = 29.1 bits (62), Expect = 0.77
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3
Query: 762 ELCYVALDFEQEM 800
+LCYVALDFEQE+
Sbjct: 215 KLCYVALDFEQEL 227
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 108 bits (260), Expect = 8e-25
Identities = 49/83 (59%), Positives = 65/83 (78%)
Frame = +1
Query: 514 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 693
+YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+
Sbjct: 132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLIS 191
Query: 694 ILTERGYSFTTTAEREIVRDIKE 762
+L +GY+F TA+ E VR++KE
Sbjct: 192 LLLRKGYAFNRTADFETVREMKE 214
Score = 93.9 bits (223), Expect = 2e-20
Identities = 37/78 (47%), Positives = 59/78 (75%)
Frame = +2
Query: 269 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 448
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 449 LNPKANREKMTQIMFETF 502
+NP ANREKM + MFE +
Sbjct: 110 MNPVANREKMCETMFERY 127
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 132 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 236
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 105 bits (253), Expect = 6e-24
Identities = 46/86 (53%), Positives = 68/86 (79%)
Frame = +1
Query: 511 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 690
A+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 136 ALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQ 195
Query: 691 KILTERGYSFTTTAEREIVRDIKESC 768
L + G+ ++AE+EIVR+IKE C
Sbjct: 196 LQLRKSGHELVSSAEKEIVREIKEKC 221
Score = 93.9 bits (223), Expect = 2e-20
Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Frame = +2
Query: 266 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 442
QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Query: 443 APLNPKANREKMTQIMFETFN 505
PL N+EK+ + +ET N
Sbjct: 113 PPLANIRNKEKIAEYFYETLN 133
Score = 55.2 bits (127), Expect = 1e-08
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +3
Query: 144 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 87.8 bits (208), Expect = 2e-18
Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +2
Query: 272 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 448
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 449 LNPKANREKMTQIMFETFN 505
LNP NRE +IMFE+FN
Sbjct: 133 LNPPENRENTAEIMFESFN 151
Score = 69.3 bits (162), Expect = 6e-13
Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 10/97 (10%)
Frame = +1
Query: 508 AAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 663
A +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I + LA
Sbjct: 153 AGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLA 212
Query: 664 GRDLTDYLMKILTERGY--SFTTTAEREIVRDIKESC 768
GRD+T ++ +L +R S TAER IKE C
Sbjct: 213 GRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEEC 244
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 144 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 227
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.0 bits (134), Expect = 1e-09
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 RDVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 424
RD + + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 425 PVLLTEAPLNPKANREKMTQIMFETFN 505
P+ +TE NP R MT+++FE +N
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYN 143
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 526 IQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 699
I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G + YL+K+
Sbjct: 151 IDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLF 210
Query: 700 TERGYSF 720
+ SF
Sbjct: 211 QIKYPSF 217
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 144 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 239
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = +2
Query: 314 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 493
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 494 ET 499
E+
Sbjct: 123 ES 124
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 129 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 230
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 511 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 690
A Y+A Q + +ASG+ T ++D G S IY+G+ L +G + D L
Sbjct: 129 ATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILA 188
Query: 691 KILTERGY 714
+ L ++ +
Sbjct: 189 QTLRDKNF 196
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/65 (35%), Positives = 40/65 (61%)
Frame = +1
Query: 571 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 750
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 751 DIKES 765
+IKES
Sbjct: 217 EIKES 221
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +2
Query: 269 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 442
++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 443 APLNPKANREKMTQIMFE 496
NP++ R+++ + FE
Sbjct: 109 PSWNPQSVRQQIMEAAFE 126
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 129 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 230
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 41.9 bits (94), Expect = 1e-04
Identities = 26/90 (28%), Positives = 44/90 (48%)
Frame = +1
Query: 520 VAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 699
+A + ++ LYA G G+V+D G + PI +G + A +L L GR +T +L +L
Sbjct: 180 IAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLL 239
Query: 700 TERGYSFTTTAEREIVRDIKESCATSLLTS 789
E + ++ + DI E A + S
Sbjct: 240 RESLPTLKSSGQYVSKEDITELFAEQVKCS 269
Score = 30.7 bits (66), Expect = 0.25
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 329 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 496
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +1
Query: 529 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 708
+++ + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339
Query: 709 GYSF 720
+ +
Sbjct: 340 HFPY 343
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.77
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 554 PVVPPVS-CWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSQTTS*RFSPSAATRSLPP 730
P VPP S T + PT ST +P P+ +TS TTS P+ + SL
Sbjct: 136 PTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT------TSTSCTTSTSIPPTGGSSSLST 189
Query: 731 P 733
P
Sbjct: 190 P 190
Score = 29.1 bits (62), Expect = 0.77
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 554 PVVPPVSCW-TPATVSPTPCPSTRDTHSPTPSCVWT*PVATSQTTS*RFSPSA-ATRSLP 727
P VPP S T + PT ST SP P+ + +TS T S S T ++P
Sbjct: 193 PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVP 252
Query: 728 PPSGKS 745
P S S
Sbjct: 253 PTSTSS 258
Score = 27.9 bits (59), Expect = 1.8
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 554 PVVPPVS-CWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSQTTS*RFSPSAATRSLPP 730
P VPP S T + PT ST SP P+ + +TS + S + T ++PP
Sbjct: 249 PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGN-STTPVTPTVPP 307
Query: 731 PSGKS 745
S S
Sbjct: 308 TSTSS 312
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +2
Query: 560 VPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSQTTS*RFSPSAATRSLPPPSG 739
+PP T P ST T +P P T TS + S S T + PP+G
Sbjct: 291 IPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS-TSSTGTSSSPLPSTSTSCTTSTSIPPTG 349
Query: 740 KS 745
S
Sbjct: 350 NS 351
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +2
Query: 560 VPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSQTTS*RFSPSAATRSLPPPSG 739
+PP T P ST T +P P T TS + S S T + PP+G
Sbjct: 345 IPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS-TSSTGTSSSPLLSTSTSCTTSTSIPPTG 403
Query: 740 KS 745
S
Sbjct: 404 NS 405
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 174 KAGFAGDDAP-RAVFPSIVGRPRHQGVMSVWD 266
KA F+G R+ + VG+P H G++S WD
Sbjct: 1533 KAKFSGQKGTLRSKYSLEVGKPMHYGIISEWD 1564
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/61 (32%), Positives = 23/61 (37%)
Frame = +2
Query: 554 PVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSQTTS*RFSPSAATRSLPPP 733
P VP S P+ P P PS+ P PS PV PS A +P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS--GAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Query: 734 S 736
S
Sbjct: 1108 S 1108
Score = 26.2 bits (55), Expect = 5.4
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = +2
Query: 554 PVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSQTTS*RFSPSAATRSLPPP 733
P VP +S P P P PS P PS P+ TS + S A S PPP
Sbjct: 1012 PPVPKLSSKAP----PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAP--SAPPP 1065
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 554 PVVPPVSCWTPATVSP-TPCPSTRDTHSPTPSCVWT*PVATSQTTS*RFSPSA 709
P P V + A SP TP P ++T +P+ S P ATS T+ R P+A
Sbjct: 504 PSTPSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATS--TANRRHPTA 554
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 389 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFN 505
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSEN 1439
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 431 LLTEAPLNPKANREKMTQIMFETFN 505
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 563 PPVSCWTPATVSPTPCPSTRDTHSP 637
PPV+C TP P C + H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 612 GHGVGDTVAGVQHDTGGTTGRVQREHGLDGDVHGGVLNVS 493
G G GDTV GG GR R D D H + N S
Sbjct: 139 GRGAGDTVVSRSSGAGGARGR--RFGWKDYDKHQRLRNAS 176
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 698 SPSAATRSLPPPSGK 742
+PS RSLPPPSG+
Sbjct: 637 TPSNPPRSLPPPSGQ 651
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,438
Number of Sequences: 5004
Number of extensions: 73052
Number of successful extensions: 267
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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