Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1746
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -3

Query: 269 SVPYRHHALMAGPSHDRGEHGARSIISCETGLAHT 165
           + P+ HH+  A P H      A S       + HT
Sbjct: 428 ATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHT 462



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +3

Query: 630 TP-PRHPASGLSRSRPHRLPHEDSHRARLLVHYH 728
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 401  LRVAPEEHPVLLTEAPLNPKANREKM 478
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 783 QERRSTALLDVTHDFPLGGGSERVAALGENLHEV 682
           Q   S+ + D+++DF + GG    A +   L EV
Sbjct: 57  QRVHSSRIPDLSYDFIVVGGGAARAVVAGRLSEV 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,244
Number of Sequences: 438
Number of extensions: 5995
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)