Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1745
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    26   7.0  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   7.0  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   9.2  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    25   9.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.2  

>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 280 HRKYTQTARI*LDKTVEQKQRRVVQYTNSLKYQNNIIKKI*CTFVIQSYFYC 125
           H  +   + + L K +E   +  V YT  ++ ++  + K  C FV+ S  YC
Sbjct: 51  HALFLGRSPVLLQKLIENNPKGDVHYTIEVETEDPYVTKESCLFVL-STLYC 101


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 306 IKSPIDESHTENTLKQQGSN*TKQLNKN 223
           I    ++ H++N  ++QG++   +LNKN
Sbjct: 427 ITEVFEQGHSQNQTEEQGNSNAPELNKN 454


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = -1

Query: 244 DKTVEQKQRRVVQYTNSLKYQNNIIKKI*CTFVIQSYFYCANVESTREQQSSYLVTPYRR 65
           D +  +K +  +Q+ +  K  N+ +  I  T +  + F C N  + +EQ+ +  + P   
Sbjct: 675 DASSSKKPKTFIQWVSRDKESNSPVL-IAETRLFNNLFKCDNPAALKEQELAAQLNPESE 733

Query: 64  FYLLNNLFE 38
             L N++ E
Sbjct: 734 VVLKNSIIE 742


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 694 SIYFFNYLIDKLKKKLFYNIIIFMVDR 614
           +I   NY+ID LKK +F N++   +D+
Sbjct: 137 TIVGLNYVIDTLKKHVFNNLLWPSLDK 163


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 230 FNCFV*LDPCCLSVFSV 280
           FNC V LDPC   VF +
Sbjct: 604 FNCSVCLDPCLAPVFII 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,008
Number of Sequences: 5004
Number of extensions: 56848
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)