Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1745
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790...    28   7.2  

>07_03_0358 -
           17177253-17177369,17177635-17177931,17178961-17179032,
           17179117-17179383,17179752-17179910,17180194-17180295,
           17180696-17180767,17181105-17181200,17181710-17181871,
           17181941-17182021,17182837-17183094,17183173-17183275,
           17183412-17183542,17184827-17184919,17184999-17185099,
           17186271-17186355,17186487-17186701,17186779-17186842,
           17187128-17187214,17188922-17189022,17190206-17190397,
           17190533-17190599,17191211-17191351
          Length = 1020

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 712 ISVLYNSIYFFNYLIDKLKKKLFYNIIIF 626
           ++ L+N    F  L D +K  LFY +IIF
Sbjct: 517 VTTLFNYARLFEELHDTVKASLFYRLIIF 545


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,253,047
Number of Sequences: 37544
Number of extensions: 248437
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)