Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1742
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 28 1.5
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 28 1.5
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 2.0
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.0
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 27 2.7
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 2.7
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 3.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.5
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.5
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 27 3.5
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 26 6.2
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 6.2
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 26 6.2
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 8.2
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 32 DVIDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFTPVPPE 157
D + P TVE++ +N V D+I + + + I + PPE
Sbjct: 108 DALMPPPTVEINYRNEVLDVIMQQRVQRNENIDPEHKGFPPE 149
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -1
Query: 271 YIKNSHFVTLQINKVILEI--LNWCFGPFGQLRTYHLGIEFRWDRSEFDRYYVLIYY 107
++ N F + + +LEI F P + RT H+ +R FD ++++ Y+
Sbjct: 87 FMSNERFFNMDVAGKVLEIHEAKHGFYPLSETRTMHVRCRYRLLGVGFDNFWLVHYF 143
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 317 CADCVRKALASNSFSLHKEFTFCNFANQQSHP 222
C DC RK + ++F FCN Q HP
Sbjct: 104 CHDC-RKQIIDSNFKRDNRTIFCNDCKQVRHP 134
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 528 LDHFLNTDLSKIERSLSPLPNFLITEHLTKINSY 629
L +LN D S++ +S SP+PN + T+ +S+
Sbjct: 230 LRQYLNQDFSRLHQSPSPIPNSNDNDSQTRRSSW 263
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Frame = +1
Query: 277 KLLEANALRTQSAQDLITLEPTEVESS----TLAKFVRS 381
KLL + +L +S++ L+TLE E+++S TL K++ S
Sbjct: 142 KLLYSASLLPRSSERLVTLETNEIDASVVIETLLKYILS 180
>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 133 DRYYVLIYYS-FGFYYIVDVIFVVHLNS 53
++Y + ++ S F F YIV+ F++HLN+
Sbjct: 69 EKYNISLFDSTFVFGYIVNCFFIIHLNT 96
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +2
Query: 11 VQLSTHHDVIDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFTPVPPEFDSQMISPQLA 190
+QL +PS+ E + V DI+ + + T+ P ++M++ +L
Sbjct: 166 LQLPKIFHTFHNPSSDEALINSRVQDIVNGLFSVIVTLGTIPIIRCPQGSAAEMVAQKLN 225
Query: 191 KRSKTPIQYLKDDFVDL 241
+R K + KD FV +
Sbjct: 226 QRLKDHLMNTKDAFVSV 242
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +2
Query: 17 LSTHHDVIDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFTPVPPEFDSQMISPQLAKR 196
LS D+ ++ D +D KS+ I ++D +K PEF + + Q
Sbjct: 423 LSADDYAYDTKRKTQIEDLE--EDQNKSK-IASKDGTNLKEINSVPEFSDENVINQTGPA 479
Query: 197 SKTPIQYLKD 226
KTP+Q KD
Sbjct: 480 KKTPVQRRKD 489
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 304 TQSAQDLITLEPTEVESSTLAKFVRSVSQQKQISCSDSDPMGQEINSIPIKMESDSLTS 480
T + DL T++PT S+ L+ ++VS S SD D +S S S +S
Sbjct: 949 TITTGDLTTIDPTTFTSTYLSSGFQTVSNTTATSGSDDDVKTASTSSSTSYTSSSSSSS 1007
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 23 THHDVIDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFT 142
T+H I SP+T D Y D+I S ++ + I V T
Sbjct: 185 TYHTPIASPTTSSNSDNEYTVDVITSSSLSSFVITNVDST 224
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 146 VPPE-FDSQMISPQLAKRSKTPIQYL 220
+PP + +ISPQ +RS+TPI+ L
Sbjct: 526 IPPSPLQNTVISPQPTRRSRTPIRSL 551
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 6.2
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Frame = +3
Query: 471 FNKFS*EIDQNCNVSENR---ELDHFLNTDLSKIERSLSPLPN---FLITEHLTKINSY- 629
FN F +D N NV +N ++ H + DLSK + ++P PN T + + +N++
Sbjct: 360 FNSFL--LDWNENVKKNDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFE 417
Query: 630 LQESLDVCSGND 665
+++D+ G +
Sbjct: 418 PYDTIDLVDGGE 429
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 6.2
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Frame = +3
Query: 471 FNKFS*EIDQNCNVSENR---ELDHFLNTDLSKIERSLSPLPN---FLITEHLTKINSY- 629
FN F +D N NV +N ++ H + DLSK + ++P PN T + + +N++
Sbjct: 360 FNSFL--LDWNENVKKNDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFE 417
Query: 630 LQESLDVCSGND 665
+++D+ G +
Sbjct: 418 PYDTIDLVDGGE 429
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 6.2
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = +1
Query: 274 EKLLEANALRTQSAQDLITLEPTEVE------SSTLAKFVRSVSQQKQ-ISCSDSDPMGQ 432
EK+ A L S DL+TL+ TE+E S L + + +S Q + CS S +
Sbjct: 14 EKIASAFELGEVSTVDLLTLDITELERRTHCSQSELLQLIEQISLLLQPVRCSASKVTSK 73
Query: 433 EINSIPIKME 462
+ + +K++
Sbjct: 74 YLTTGDVKLD 83
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 439 NSIPIKMESDSLTSLVEKSI 498
++IP KME DS+TS+ + S+
Sbjct: 774 STIPKKMEPDSVTSVTQPSV 793
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,498
Number of Sequences: 5004
Number of extensions: 55996
Number of successful extensions: 185
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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