Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1742
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0831 + 11620831-11620883,11621002-11621106,11621399-11621873     32   0.40 
04_04_1292 - 32413046-32413807,32413901-32413936,32414037-324141...    29   3.7  

>03_02_0831 + 11620831-11620883,11621002-11621106,11621399-11621873
          Length = 210

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 23  THHDVIDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFTPV-PPEFDSQMIS 178
           T+ D ++ P+T ++  K+Y D  + S T  N+      F P+ P EF  Q  S
Sbjct: 59  TYKDNMNCPATKQIQQKDYSDPPLYSVTYYNEHTCNSAFLPLSPSEFQLQTAS 111


>04_04_1292 -
           32413046-32413807,32413901-32413936,32414037-32414179,
           32414263-32414419,32414518-32414679,32414860-32415107,
           32415589-32415733
          Length = 550

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 274 EKLLEA-NALRTQSAQDLITLEPTEVESSTLAKFVRSVSQQKQISCSDSDPMGQEINSIP 450
           EK++ A + + ++ A +   LE  +     + K  + VS     +CS  D   +E     
Sbjct: 194 EKIVSALHTVLSEQADEDSDLEKCKTSMRRVGKMQKDVSS----ACSKGDDPRRETLCTE 249

Query: 451 IKMESDSLTSLVEK 492
           +K E DS+T  +EK
Sbjct: 250 LKEEEDSMTECIEK 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,711,309
Number of Sequences: 37544
Number of extensions: 321193
Number of successful extensions: 950
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)