Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1742
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024794-7|AAK68501.3|  279|Caenorhabditis elegans Hypothetical ...    35   0.067
U39744-2|AAK18883.2|  362|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z78539-7|CAB01726.2|  560|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U29244-14|AAC71095.1|  774|Caenorhabditis elegans Fzo (fzo mitoc...    29   4.4  
Z81594-2|CAB04746.1|  416|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z69385-7|CAA93429.2|  508|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U97007-4|AAB52297.2|  491|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical ...    28   7.7  
AC006757-2|AAF60543.1|  416|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AC024794-7|AAK68501.3|  279|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.9 protein.
          Length = 279

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 18/62 (29%), Positives = 36/62 (58%)
 Frame = +1

Query: 343 EVESSTLAKFVRSVSQQKQISCSDSDPMGQEINSIPIKMESDSLTSLVEKSIKTAM*VKI 522
           E E STL+  V + S++   + S+     ++I+++P+ +++ S   L  KSI+T +  +I
Sbjct: 11  ETEPSTLSTDVTTSSEETTSTSSEESTTFEDISTVPVALQNSSKVFLPAKSIRTPIVFRI 70

Query: 523 ES 528
            S
Sbjct: 71  IS 72


>U39744-2|AAK18883.2|  362|Caenorhabditis elegans Hypothetical
           protein C03F11.2 protein.
          Length = 362

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 23/85 (27%), Positives = 38/85 (44%)
 Frame = +2

Query: 26  HHDVIDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFTPVPPEFDSQMISPQLAKRSKT 205
           H+ V+DSPS  +VH K  +   I S  I+  +I  V  T   P+   Q      A+    
Sbjct: 15  HYIVVDSPSATDVHSKELMLKGIASRNIVPGEIQYVVTTHGHPDHFGQGNFFPNARHFFG 74

Query: 206 PIQYLKDDFVDLQSYKM*ILYVKKN 280
             +Y   +F+  + +   I+ + KN
Sbjct: 75  SYEYSDTNFISTELHTKDIMQLTKN 99


>AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical
           protein C07H6.9 protein.
          Length = 139

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = -1

Query: 181 RTYHLGIEFRWDRSEFDRYYVLIYYSFGFYYIVDVIFVVHLNSTRGVDDVMV 26
           ++ +LG  + + ++E   Y  L+Y  F  +++  ++ V++  S  GV  + V
Sbjct: 12  QSVYLGSAYFYMKTESFVYLSLVYIQFSLFFLTSILIVIYFISYNGVQRLNV 63


>Z78539-7|CAB01726.2|  560|Caenorhabditis elegans Hypothetical
           protein C31E10.5 protein.
          Length = 560

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 56  VEVHDKNYVDDIIKSETIINQDIITVKFTPVPPEFDSQMISPQ 184
           VE +D   VDDII     I++ +  +   P+P E+  + +S Q
Sbjct: 414 VEFNDDKIVDDIIALSNRISKVVQVIMSIPLPDEYRKEAMSYQ 456


>U29244-14|AAC71095.1|  774|Caenorhabditis elegans Fzo (fzo
           mitochondrial fusion protein)related protein 1 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 603 EHLTKINSYLQESLDVCSGNDSNNR 677
           +HLT+   +L + L+VCS  + N+R
Sbjct: 288 QHLTRFRQFLVDELEVCSEREVNDR 312


>Z81594-2|CAB04746.1|  416|Caenorhabditis elegans Hypothetical
           protein T20F10.4 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -1

Query: 253 FVTLQINKVILEILNWCFGPFGQLRTYHLGIEFRWDRSEFDRYYVLIYYSFGFYYIVDVI 74
           +V L   +   E L + F  F  ++ Y+   EFR    E  + Y+ +     +YY   ++
Sbjct: 302 YVELNSERYPHECLKFDFDKFNAVQQYNFAKEFRNSYYESTKDYIFMEEDVYYYYYPLLV 361

Query: 73  FVVHLNSTR 47
           F V   + R
Sbjct: 362 FDVSKQNDR 370


>Z69385-7|CAA93429.2|  508|Caenorhabditis elegans Hypothetical
           protein ZK593.8 protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 17  LSTHHDVIDSPSTVEVHDKNYVD-DIIKSETIINQDIITVKFTPVPPEF 160
           LS  HD I     +E+H +   + D +++  I    +   +FTPV PE+
Sbjct: 319 LSKEHDEISIDDILEMHRRVLGNADPVEAGRIRTTQVYVGRFTPVSPEY 367


>U97007-4|AAB52297.2|  491|Caenorhabditis elegans Hypothetical
           protein ZC196.6 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +2

Query: 5   DRVQLSTHHDV-----IDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFTPVPPEFDSQ 169
           D++Q  +H DV     +DS   +E  D   +DD IK+ + + ++I   + T   P+ + Q
Sbjct: 201 DQIQQISHLDVTAKEDVDSSIELENEDNCQIDDDIKNTSEVRKEITKFEETVAVPDENEQ 260


>AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical
           protein Y26D4A.10 protein.
          Length = 546

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -1

Query: 253 FVTLQINKVILEILNWCFGPFGQLRTYHLGIEFRWDRSEFDRYYVLIYYSFGFYYIVDVI 74
           +V L   +   E L + F  F  ++ Y+   EFR    E  + Y+ +     +YY   ++
Sbjct: 302 YVELNSERYPHECLKFDFDKFNAVQQYNFAKEFRNSYYESTKDYIFMEEDVYYYYYPLLV 361

Query: 73  FVVHLNSTR 47
           F V   + R
Sbjct: 362 FDVSKQNDR 370


>AC006757-2|AAF60543.1|  416|Caenorhabditis elegans Hypothetical
           protein Y40C7B.3 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -1

Query: 253 FVTLQINKVILEILNWCFGPFGQLRTYHLGIEFRWDRSEFDRYYVLIYYSFGFYYIVDVI 74
           +V L   +   E L + F  F  ++ Y+   EFR    E  + Y+ +     +YY   ++
Sbjct: 302 YVELNSERYPHECLKFDFDKFNAVQQYNFAKEFRNSYYESTKDYIFMEEDVYYYYYPLLV 361

Query: 73  FVVHLNSTR 47
           F V   + R
Sbjct: 362 FDVSKQNDR 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,864,414
Number of Sequences: 27780
Number of extensions: 312776
Number of successful extensions: 1001
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)