Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1742
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.7  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.8  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 636 ESLDVCSGNDSNNRCTPSII 695
           E +D CS  DS+++C  S +
Sbjct: 108 EMIDSCSNVDSSDKCEKSFM 127


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 552 LSKIERSLSPLP 587
           +SK++RS SPLP
Sbjct: 9   ISKVDRSTSPLP 20


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 645 DVCSGNDSNNRCTPSII 695
           DV SGN    RCT  I+
Sbjct: 447 DVISGNLEKGRCTGKIV 463



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 618 INSYLQESLDVCSGNDSNNRCTPSIIHDNV 707
           ++S+  +S D    ND N       IHDN+
Sbjct: 344 MSSFDFQSKDQGPPNDGNGNILSPSIHDNI 373


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 IITVKFTPVPPEFDSQMISPQLAKRSKT-PIQ 214
           +I V   PVP   DS ++SP   K S + P+Q
Sbjct: 790 MIPVYCVPVPQVNDSTILSPVREKLSSSQPMQ 821


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 603 EHLTKINSYLQE 638
           EHLTK+N+ ++E
Sbjct: 97  EHLTKLNNAIEE 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,054
Number of Sequences: 438
Number of extensions: 3700
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)