Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1740
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0118 - 20964931-20966349                                         32   0.48 
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    31   1.5  
12_01_0160 - 1212295-1213586,1213828-1213976,1214288-1214445,121...    28   7.8  

>09_06_0118 - 20964931-20966349
          Length = 472

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = +1

Query: 97  NAIEHRKCLDAKPKYFYLNIFPVCVIPSP*KV*IKNKLHLNCVKMVFQPTR 249
           +A++ R  LD   K+F L+  P+C +P+P ++ + + LHL   +MV  P R
Sbjct: 207 DAVDQR-LLDLIYKFFSLHE-PLCQVPAPSQLTVHHLLHLQYQRMVMPPER 255


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 762  INLLFEKDLLAEHNKDENEQSNCSSSTRTQNYDSDS 655
            +NL F     A HN  + E  +  SSTRT +  SDS
Sbjct: 3119 LNLAFYSGKDANHNAQKTESGDIGSSTRTGSQSSDS 3154


>12_01_0160 -
           1212295-1213586,1213828-1213976,1214288-1214445,
           1214860-1215004,1215102-1215226
          Length = 622

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 412 KSYERKKFGLIRTVQIILHSIVKLRNIKYEDFHNFYQNGSQIL 540
           K  E+ + GL R+   + +++   ++ ++ED  N Y+ G+Q L
Sbjct: 102 KKMEKNRIGLKRSAFYMAYAVYYEKHKRFEDAENMYRLGTQNL 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,293,515
Number of Sequences: 37544
Number of extensions: 346990
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)