Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1740
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    29   5.3  
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
           protein Y67D8C.9 protein.
          Length = 1073

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 681 EYYLNNLIVHFHLYCVLLRDLSQTTNL*TFNFMIPVIYKIL 803
           EY+L+N  V+ HLY  LL  L+  T +    F I  +YK +
Sbjct: 776 EYFLSNS-VNPHLYLYLLGYLAHETKMEVMLFGIDAVYKFI 815


>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 73  RPTLSRYFNAIEHRKCLDAKPKYFYLNIFPVCVIPSP 183
           +PT++  +  ++ + C+D     F LN F  C+IPSP
Sbjct: 361 QPTINEIYRELQ-KVCVDPTDLIF-LNTFHECIIPSP 395


>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 73  RPTLSRYFNAIEHRKCLDAKPKYFYLNIFPVCVIPSP 183
           +PT++  +  ++ + C+D     F LN F  C+IPSP
Sbjct: 361 QPTINEIYRELQ-KVCVDPTDLIF-LNTFHECIIPSP 395


>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 648 FHQNRNHNFEF-EYYLN-NLIVHFHLYCVLLRDLS 746
           F+ N  H+    EYY N NL+VH  LY  + RDL+
Sbjct: 317 FYLNWWHSSNMAEYYRNWNLVVHDWLYAYVFRDLA 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,530,666
Number of Sequences: 27780
Number of extensions: 362379
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)