Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1738
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   5.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   5.2  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    26   6.8  

>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 546 YTVQCFNGFNYMFS*KSFWNRLPSYFCQSIS 454
           + +  F  F Y+F     WN  PSY  Q++S
Sbjct: 257 WRISPFRFFLYVFIASFIWNWFPSYIFQALS 287


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 503 ENLFGTDCLVISVKVFLVCINIHHKNYVVRQVKFANFQ*SNTYM 372
           +NLF     V  V  FL C  I   NY ++Q K A F+   TY+
Sbjct: 66  DNLFRKSISVAHVFAFLRCNPIRSPNYYIQQAK-APFE-GKTYI 107


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 337 TSFQIELSSKRYSMEYRKIENKNRLFLPFVLYCLSQEYTRV 215
           T ++ EL  K     YR   N NRL   + L  L+   TRV
Sbjct: 136 TFYREELDKKHRDKSYRYFNNINRLAKEYPLAHLADPNTRV 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,749
Number of Sequences: 5004
Number of extensions: 70286
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)