Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1737X
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    42   9e-05
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    31   0.094
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   2.7  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   4.7  
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    26   4.7  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.2  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   8.2  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   8.2  

>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 22/61 (36%), Positives = 34/61 (55%)
 Frame = +1

Query: 10  NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
           N  ++L+GNKCDC   + +++    Q LAD  G+   E SA  +    NV+  F TLA +
Sbjct: 114 NVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNV---NVDEAFFTLARE 169

Query: 190 L 192
           +
Sbjct: 170 I 170


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 31.5 bits (68), Expect = 0.094
 Identities = 23/75 (30%), Positives = 32/75 (42%)
 Frame = +1

Query: 25  LVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLYSKQ 204
           L GNK D       +    A+  A    +  FETSA      +NV  +F  +A KL  + 
Sbjct: 125 LAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSA---KTAENVNELFTAIAKKLPLED 181

Query: 205 PLRVISVAGEVSKGV 249
            L      G V++GV
Sbjct: 182 KLN--QARGAVNRGV 194


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 100 YQLISE--HKWWLAWIQEYHSHIY 35
           +QL S+  + WWL++  + H H+Y
Sbjct: 102 HQLYSDWMYVWWLSYTAKQHGHVY 125


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 299 LSMQLKITLKHESIVGQL*SQHRYRRDQMKHFPLN 403
           L++Q+ IT     I  Q+ S++ +R DQ+   PL+
Sbjct: 146 LAVQIDITAHRSHISRQVFSKNSFRSDQLVKIPLS 180


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +1

Query: 16  PRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKL 192
           P VLV NKCD    E  ++    ++LA        ETSA L     NVE  F +L   +
Sbjct: 115 PVVLVANKCDL-EAERVVSRAEGEQLAKSMHCLYVETSAKLRL---NVEEAFYSLVRTI 169


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -1

Query: 581 RAAAYRQILQTTNKYMRMLTACRRLGVRER----QHDVDITNQLLVLVLKNKIA 432
           R+A+ R+  Q   +  R  TA R   ++ R      DVD+ N  L + LKN+ A
Sbjct: 170 RSASLRE-KQAREEAERAATALREAELKHRLAQANADVDVANSKLDIALKNEAA 222


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 203 CLEYNLCAKVKNIDSTLSHSESNSADVSN 117
           CLE N  +KV N+DS L    SN AD  N
Sbjct: 427 CLETNTNSKVINVDSLL---VSNGADQIN 452


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 302 TAILIGTATNFPLS*QVTTPLLTSPATL 219
           T I  G  +++PLS  V+TP+  SP ++
Sbjct: 296 TTIQQGDVSSYPLSRSVSTPVPMSPISI 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,427
Number of Sequences: 5004
Number of extensions: 45929
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)