Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1737X
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0685 - 5177340-5177363,5177770-5177865,5177991-5178053,517... 51 6e-07
07_01_0926 - 7775536-7775616,7775695-7775787,7775903-7775965,777... 47 1e-05
03_06_0475 + 34193951-34194023,34195414-34195486,34195572-341956... 47 1e-05
05_05_0118 - 22504483-22504566,22504650-22504742,22504852-225049... 47 1e-05
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 46 2e-05
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 38 0.008
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 38 0.008
09_06_0029 + 20336634-20336881,20337737-20338208 37 0.010
05_01_0037 - 256891-256998,257347-257502,257753-257824,258737-25... 36 0.032
02_04_0402 + 22618998-22619043,22619206-22619345,22620067-226201... 35 0.055
05_01_0036 + 253734-253904,255216-255707 33 0.17
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 32 0.30
10_03_0038 - 7297210-7297248,7297361-7297429,7297524-7297731,729... 31 0.90
05_06_0082 - 25425050-25425479,25426551-25426783 31 0.90
01_06_1359 - 36645892-36646031,36646625-36646836,36647411-366475... 29 2.7
01_05_0091 + 18048595-18050559 29 2.7
11_03_0067 - 9535565-9536157,9536446-9536757,9536948-9537212,953... 29 3.6
01_01_0317 - 2569072-2569305,2569418-2569633,2569738-2570016,257... 27 8.4
>07_01_0685 -
5177340-5177363,5177770-5177865,5177991-5178053,
5178138-5178232,5178941-5179028,5179372-5179444,
5179866-5179920,5180355-5180463
Length = 200
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
N ++LVGNK D T ++T Q+LAD YGM FETSA + NVE +F T+A
Sbjct: 124 NVNKILVGNKVDMDTKRV-VSTAQGQKLADEYGMKFFETSAKTN---QNVEQVFFTIARD 179
Query: 190 LYSKQPL-RVISVAGEV 237
+ KQ L ++ A E+
Sbjct: 180 I--KQRLTETVAAAAEL 194
>07_01_0926 -
7775536-7775616,7775695-7775787,7775903-7775965,
7776326-7776423,7776661-7776761,7776865-7776937,
7778575-7778647
Length = 193
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
N ++LVGNK D + + T+ Q LAD YG+ FETSA + NVE +F ++A
Sbjct: 98 NVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL---NVEQVFFSIARD 154
Query: 190 L 192
+
Sbjct: 155 I 155
>03_06_0475 +
34193951-34194023,34195414-34195486,34195572-34195672,
34195912-34196009,34196326-34196388,34196534-34196626,
34196697-34196774
Length = 192
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
N ++LVGNK D + + T+ Q LAD YG+ FETSA + NVE +F ++A
Sbjct: 98 NVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL---NVEQVFFSIARD 154
Query: 190 L 192
+
Sbjct: 155 I 155
>05_05_0118 -
22504483-22504566,22504650-22504742,22504852-22504914,
22505048-22505145,22505378-22505478,22505581-22505653,
22505872-22505910,22506946-22507018
Length = 207
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
N ++LVGNK D + + T Q LAD YG+ FETSA + NVE +F ++A
Sbjct: 111 NVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNL---NVEQVFFSIARD 167
Query: 190 L 192
+
Sbjct: 168 I 168
>01_05_0340 -
21139885-21139978,21140169-21140272,21140379-21140534,
21140622-21140693,21140782-21140829,21140923-21140970,
21141807-21141879,21142333-21142346
Length = 202
Score = 46.0 bits (104), Expect = 2e-05
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYA-QRLADRYGMPLFETSALLDSECDNVESIFLTLAH 186
N ++LVGNKCD E+R+ + A + LAD G+P ETSA + NVE F+T+A
Sbjct: 113 NVNKLLVGNKCDLA--ENRVVSYEAGKALADEIGIPFLETSA---KDATNVEKAFMTMAG 167
Query: 187 KLYSKQPLRVISVAGEVSKGVVTCQDRGKLVA 282
++ + R+ S + T Q RG+ VA
Sbjct: 168 EIKN----RMASQPATNASKPATVQMRGQPVA 195
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLA 183
N ++LVGNK D T +++ A+ AD G+P ETSA NVE F+ +A
Sbjct: 129 NVNKLLVGNKSDL-TANKVVSSETAKAFADEMGIPFMETSA---KNATNVEQAFMAMA 182
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLA 183
N ++LVGNK D T +++ A+ AD G+P ETSA NVE F+ +A
Sbjct: 113 NVNKLLVGNKSDL-TANKVVSSETAKAFADEMGIPFMETSA---KNATNVEQAFMAMA 166
>09_06_0029 + 20336634-20336881,20337737-20338208
Length = 239
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 25 LVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLYSKQ 204
L+GNK D +A A R A+ G+ E SAL DNV+ FLTL ++++
Sbjct: 132 LIGNKADMPAGRREVAADEAARFAEEQGLFFSEASAL---SGDNVDRAFLTLLEEIFAVV 188
Query: 205 PLRVISV 225
R + +
Sbjct: 189 SRRALEL 195
>05_01_0037 -
256891-256998,257347-257502,257753-257824,258737-258784,
259071-259143,259237-259250
Length = 156
Score = 35.5 bits (78), Expect = 0.032
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +1
Query: 19 RVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLA 183
++LVGNKCD + T A+ A+ G+ ETSA E NVE FLT++
Sbjct: 100 KLLVGNKCDL-VDSKVVDTEEAKAFAESLGISFLETSA---KESINVEEAFLTMS 150
>02_04_0402 +
22618998-22619043,22619206-22619345,22620067-22620149,
22620234-22620438,22620524-22620592,22621099-22621188
Length = 210
Score = 34.7 bits (76), Expect = 0.055
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTY--AQRLADRYGMPLFETSALLDSECDNVESIFLTLA 183
N +L+GNKCD R A +Y ++ A +G+ E SA NVE F+ A
Sbjct: 111 NMTVMLIGNKCDL---SHRRAVSYEEGEQFAKEHGLVFMEASA---KTAQNVEEAFIKTA 164
Query: 184 HKLYSKQPLRVISVAGE 234
+Y K V V+ E
Sbjct: 165 GTIYKKIQDGVFDVSNE 181
>05_01_0036 + 253734-253904,255216-255707
Length = 220
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 22 VLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLY-- 195
+LVGNK D + +AT A + A+ G+ ETSAL E NVE F + +Y
Sbjct: 123 MLVGNKTDLKHLRA-VATDDAHKFAEAEGLSYIETSAL---EATNVEEAFQLILGDIYRA 178
Query: 196 -SKQPL 210
SK+P+
Sbjct: 179 ISKKPV 184
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +1
Query: 19 RVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLYS 198
++LVGNKCD + + LA+ G+ ETSAL + NV + F + ++YS
Sbjct: 129 KMLVGNKCDLDNIR-EVPVEEGKALAEAEGLFFMETSAL---DSTNVRTAFEIVIKEIYS 184
Query: 199 KQPLRVIS 222
++++
Sbjct: 185 NVSRKILN 192
>10_03_0038 -
7297210-7297248,7297361-7297429,7297524-7297731,
7297829-7297911,7298859-7298998,7299132-7299183
Length = 196
Score = 30.7 bits (66), Expect = 0.90
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 22 VLVGNKCDCGTPESRLATTY--AQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLY 195
+L+GNKCD R +Y ++ A +G+ E SA NVE F+ A ++
Sbjct: 118 ILIGNKCDL---SHRRVVSYQEGEQFAKEHGLLFMEASA---KTAHNVEKAFILAARTVH 171
Query: 196 SKQPLRVISVAGE 234
K VI++ E
Sbjct: 172 KKIEDGVINLLDE 184
>05_06_0082 - 25425050-25425479,25426551-25426783
Length = 220
Score = 30.7 bits (66), Expect = 0.90
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +1
Query: 22 VLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLYSK 201
+L+GNK D + ++T + A+ M ETSAL + DN + LT +++ +K
Sbjct: 126 MLIGNKSDLRHLVA-VSTEDGKEFAEAESMYFMETSALDATNVDNAFAEVLTQIYQIVNK 184
Query: 202 QPL 210
+P+
Sbjct: 185 KPV 187
>01_06_1359 -
36645892-36646031,36646625-36646836,36647411-36647594,
36647720-36647795
Length = 203
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 212 ELLVWREKSVRVWSLVKTEESWLQF 286
++++WR K V WSL SW+ F
Sbjct: 28 DVVLWRRKEVAGWSLAAVAASWVLF 52
>01_05_0091 + 18048595-18050559
Length = 654
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/34 (26%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -2
Query: 118 IEAC--HIYQLISEHKWWLAWIQEYHSHIYCPQG 23
+ AC ++Y+L+S+ W+++ + + +++C QG
Sbjct: 122 LSACGRNVYELVSDFDWYVSLLTDMGRNLHCAQG 155
>11_03_0067 -
9535565-9536157,9536446-9536757,9536948-9537212,
9537810-9538048,9538400-9538568,9539216-9539410,
9539649-9539766,9542140-9542315
Length = 688
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 58 ESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLYSKQP--LRVISVAG 231
E +L+ Y + + + LF+++A L +E N ++ K K P V
Sbjct: 311 EEQLSKLYTRAVFTLFKETLFDSTAFLVNEVSNAMGAYVVTHGKTIRKNPWSQHAFQVTA 370
Query: 232 EVSKGVVTCQ 261
+V G+ C+
Sbjct: 371 DVESGLYECE 380
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 58 ESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLYSKQP--LRVISVAG 231
E +L+ Y + + + LF+++A L +E N ++ K K P V
Sbjct: 415 EEQLSKLYTRAVFTLFKETLFDSTAFLVNEVSNAMGAYVVTHGKTIRKNPWSQHAFQVTA 474
Query: 232 EVSKGVVTCQ 261
+V G+ C+
Sbjct: 475 DVESGLYECE 484
>01_01_0317 -
2569072-2569305,2569418-2569633,2569738-2570016,
2570491-2570997
Length = 411
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 309 CIDSYSDRNCNQLSSVLTSDHTLTDFSRHTNNSQWLFR 196
C D Y D CN + + + + RHT N W FR
Sbjct: 348 CKD-YGDSVCNAVKAAMAELNEYNPRGRHTMNELWNFR 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,873,285
Number of Sequences: 37544
Number of extensions: 282005
Number of successful extensions: 624
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -