Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1737X
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 78 4e-15
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 46 2e-05
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 41 8e-04
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 41 8e-04
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 41 8e-04
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 41 8e-04
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 41 8e-04
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 40 0.001
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 40 0.001
AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family pr... 36 0.016
AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein. 36 0.016
Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical pr... 36 0.021
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 36 0.028
AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical ... 36 0.028
AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein. 36 0.028
Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical p... 32 0.26
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 32 0.26
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 32 0.35
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 32 0.35
Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical p... 30 1.4
AF026204-3|AAB71253.1| 424|Caenorhabditis elegans Hypothetical ... 29 1.9
AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical ... 29 3.2
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 28 4.3
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 27 7.5
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 27 7.5
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 78.2 bits (184), Expect = 4e-15
Identities = 41/74 (55%), Positives = 49/74 (66%)
Frame = +1
Query: 1 GLMNAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTL 180
G PR+L+GNKCD +R++T AQ ADR M LFETSA L SE D+VESIFLTL
Sbjct: 206 GDSEVPRILIGNKCDVECT-NRVSTDEAQMFADRNNMALFETSAKLASEADHVESIFLTL 264
Query: 181 AHKLYSKQPLRVIS 222
HKL +P+ V S
Sbjct: 265 LHKLQQSKPMHVQS 278
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
N ++LVGNKCD T + + T AQ A + G+P ETSA NVE FLT+A +
Sbjct: 116 NVNKLLVGNKCDL-TAKRAVETQAAQDYAGQLGIPFLETSA---KSSTNVEQAFLTMASE 171
Query: 190 LYSK 201
+ S+
Sbjct: 172 IKSR 175
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
NA VLVGNKCD + E ++ ++LAD+ G+ FETSA E NV+++F L
Sbjct: 127 NAQVVLVGNKCDMDS-ERVVSMDRGRQLADQLGLEFFETSA---KENINVKAVFEKLVEI 182
Query: 190 LYSK 201
+ K
Sbjct: 183 ICDK 186
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
NA VLVGNKCD + E ++ ++LAD+ G+ FETSA E NV+++F L
Sbjct: 127 NAQVVLVGNKCDMDS-ERVVSMDRGRQLADQLGLEFFETSA---KENINVKAVFEKLVEI 182
Query: 190 LYSK 201
+ K
Sbjct: 183 ICDK 186
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
NA VLVGNKCD + E ++ ++LAD+ G+ FETSA E NV+++F L
Sbjct: 127 NAQVVLVGNKCDMDS-ERVVSMDRGRQLADQLGLEFFETSA---KENINVKAVFEKLVEI 182
Query: 190 LYSK 201
+ K
Sbjct: 183 ICDK 186
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
NA VLVGNKCD + E ++ ++LAD+ G+ FETSA E NV+++F L
Sbjct: 141 NAQVVLVGNKCDMDS-ERVVSMDRGRQLADQLGLEFFETSA---KENINVKAVFEKLVEI 196
Query: 190 LYSK 201
+ K
Sbjct: 197 ICDK 200
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
NA VLVGNKCD + E ++ ++LAD+ G+ FETSA E NV+++F L
Sbjct: 127 NAQVVLVGNKCDMDS-ERVVSMDRGRQLADQLGLEFFETSA---KENINVKAVFEKLVEI 182
Query: 190 LYSK 201
+ K
Sbjct: 183 ICDK 186
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/74 (32%), Positives = 36/74 (48%)
Frame = +1
Query: 19 RVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLYS 198
R+++GNKCD ++ ++LA YG ETSA + N++ F TLA + S
Sbjct: 116 RMIIGNKCDI-EERREVSRDRGEQLAIEYGTKFLETSAKANL---NIDEAFFTLARDIKS 171
Query: 199 KQPLRVISVAGEVS 240
K + G VS
Sbjct: 172 KMEQNEMRAGGSVS 185
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/74 (32%), Positives = 36/74 (48%)
Frame = +1
Query: 19 RVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLYS 198
R+++GNKCD ++ ++LA YG ETSA + N++ F TLA + S
Sbjct: 116 RMIIGNKCDI-EERREVSRDRGEQLAIEYGTKFLETSAKANL---NIDEAFFTLARDIKS 171
Query: 199 KQPLRVISVAGEVS 240
K + G VS
Sbjct: 172 KMEQNEMRAGGSVS 185
>AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family
protein 37 protein.
Length = 196
Score = 36.3 bits (80), Expect = 0.016
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +1
Query: 25 LVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKL 192
LVGNKCD P + + T +RLA+ Y +P ETSA NV+ FL LA ++
Sbjct: 113 LVGNKCDL--PRA-VPTDEGKRLAEAYQIPFMETSAKTGF---NVDRAFLGLAERM 162
>AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein.
Length = 196
Score = 36.3 bits (80), Expect = 0.016
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +1
Query: 25 LVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKL 192
LVGNKCD P + + T +RLA+ Y +P ETSA NV+ FL LA ++
Sbjct: 113 LVGNKCDL--PRA-VPTDEGKRLAEAYQIPFMETSAKTGF---NVDRAFLGLAERM 162
>Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical
protein C27B7.8 protein.
Length = 188
Score = 35.9 bits (79), Expect = 0.021
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +1
Query: 16 PRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLY 195
P +LVGNKCD E + Q LA ++G ETSA NV +F L ++
Sbjct: 110 PMILVGNKCDL-EDERVVGKDQGQNLARQFGSAFLETSAKAKI---NVSEVFYDLVRQIN 165
Query: 196 SKQP 207
+ P
Sbjct: 166 RRYP 169
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 35.5 bits (78), Expect = 0.028
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +1
Query: 22 VLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLYSK 201
+L+GNK D + T + A + G+ ETSA + +VE F+ AH++Y K
Sbjct: 115 MLIGNKSDLKAVRD-VTTEEGEAFAKKNGLTFMETSAKANK---HVEKAFVNTAHEIYKK 170
Query: 202 QPLRVI 219
L VI
Sbjct: 171 LKLGVI 176
>AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical
protein Y87G2A.4 protein.
Length = 215
Score = 35.5 bits (78), Expect = 0.028
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 22 VLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTL 180
++ GNK D +++T A++LAD+ G+P FETSA + + L L
Sbjct: 126 IICGNKADLEN-RRQVSTARAKQLADQLGLPYFETSACTSTNVEKSVDCLLDL 177
>AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein.
Length = 215
Score = 35.5 bits (78), Expect = 0.028
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 22 VLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTL 180
++ GNK D +++T A++LAD+ G+P FETSA + + L L
Sbjct: 126 IICGNKADLEN-RRQVSTARAKQLADQLGLPYFETSACTSTNVEKSVDCLLDL 177
>Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical
protein C08F8.7 protein.
Length = 205
Score = 32.3 bits (70), Expect = 0.26
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 16 PRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIF 171
P +LVGNK D ++ + A A++ +P FETSA L+ NV +F
Sbjct: 109 PMILVGNKSDLAETR-QVDESEAHNFAEKLKIPYFETSARLN---QNVSEVF 156
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 32.3 bits (70), Expect = 0.26
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 16 PRVLVGNKCDC--GTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
P +LVGNK D TP S +A T +A G+ ETSAL S N+++ L L +
Sbjct: 568 PIILVGNKVDMRISTPGS-VAKTDGASMAAAMGVLFMETSALDGS---NIDNAMLALTRE 623
Query: 190 LYSKQPLRVIS 222
L + + + + S
Sbjct: 624 LMAVEDVEIRS 634
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 31.9 bits (69), Expect = 0.35
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
+ P VLVGNKCD + T A YG+P +TSA V+ F TL +
Sbjct: 108 DVPMVLVGNKCDLSSRSVDFRT--VSETAKGYGIPNVDTSAKTRM---GVDEAFYTLVRE 162
Query: 190 L 192
+
Sbjct: 163 I 163
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 31.9 bits (69), Expect = 0.35
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +1
Query: 10 NAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHK 189
+ P VLVGNKCD + T A YG+P +TSA V+ F TL +
Sbjct: 111 DVPMVLVGNKCDLSSRSVDFRT--VSETAKGYGIPNVDTSAKTRM---GVDEAFYTLVRE 165
Query: 190 L 192
+
Sbjct: 166 I 166
>Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical
protein C25D7.7 protein.
Length = 181
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 1 GLMNAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFETSA 132
G N P +LVGNKCD + + ++ + LA+ + P E SA
Sbjct: 105 GSENVPILLVGNKCDL-SHQRQVRSEEGLALAESWSCPFTECSA 147
>AF026204-3|AAB71253.1| 424|Caenorhabditis elegans Hypothetical
protein C30E1.8 protein.
Length = 424
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +1
Query: 4 LMNAPRVLVGNKCDCGTPESRLATTYAQRLADRYGMPLFE----TSALLDSECDNVESI- 168
L+ RV VGN+ + G P S LA TY Q + +FE + L D+E N+ +
Sbjct: 34 LLEQIRVFVGNEYENGIPLSTLAFTY-QSPSQLIPFAVFEKAYINTTLGDNELKNLSGVM 92
Query: 169 FLTLAHK 189
++T +H+
Sbjct: 93 YITSSHQ 99
>AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical
protein 4R79.2 protein.
Length = 395
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 25 LVGNKCDCGTPESRLATTY--AQRLADRYGMPLFETSA 132
LVGNK D + + Y A++LA + +P FETSA
Sbjct: 313 LVGNKMDLFGSDIARSAVYRAAEKLAVEFKIPFFETSA 350
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 28.3 bits (60), Expect = 4.3
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 19 RVLVGNKCDCGTPESRLA-TTYAQRLADRYGMPLFETSALLDSECDNVESIFLTLAHKLY 195
+VLVGNKC+ E R+ + A+ A + FETSA E NVE +F + +
Sbjct: 117 KVLVGNKCE--ENERRVVLESDARNYAQSMNISFFETSA---KEDKNVEPMFTCITSLVL 171
Query: 196 SKQPLRVISVAGEVSK-GVVTCQD 264
+ + S + + S+ G V+ +D
Sbjct: 172 TAKLANPQSASKDQSRTGGVSLKD 195
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 85 QRLADRYGMPLFETSALLDS--ECDNVESIFLTLAHK 189
Q++ DRYGMP+ + + D DN+ S F LA +
Sbjct: 604 QQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADR 640
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 85 QRLADRYGMPLFETSALLDS--ECDNVESIFLTLAHK 189
Q++ DRYGMP+ + + D DN+ S F LA +
Sbjct: 604 QQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADR 640
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,872,941
Number of Sequences: 27780
Number of extensions: 256651
Number of successful extensions: 631
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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