Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1733
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    30   0.36 
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    30   0.48 

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 350  IHDKKNCVKDTGSTHPRPEKVPRTRIHHSV 439
            IH   NC+ D G T  +PEKVP    H+ V
Sbjct: 2246 IHVDFNCLFDKGLTFEKPEKVPFRLTHNMV 2275


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +1

Query: 169 WIVFKIYYKGTTKLISLSSVFLDLVLCILYSTPVQNVVYRPQAAGS 306
           +I  K+YYK  TK I+LS+  +DL     Y TPV+      ++AGS
Sbjct: 529 FICHKLYYK--TKRITLSN--MDLETDFAYKTPVEEEEEEEKSAGS 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,118
Number of Sequences: 5004
Number of extensions: 67937
Number of successful extensions: 159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)