Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1733
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784     31   1.2  
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093           31   1.5  
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299...    29   4.7  
08_01_0652 + 5627226-5628395,5628885-5629040,5629115-5629304,562...    29   6.2  
05_06_0015 + 24953918-24954359,24955622-24955857,24955945-249560...    28   8.2  
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964     28   8.2  
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228...    28   8.2  

>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
          Length = 1035

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 342  LTAFMIKKIVLR--ILVAHIPDQRKYLEPESIIQCPRDW 452
            ++A M++ I++R    + H+PD +   EP  I+ C +DW
Sbjct: 938  MSAPMLETILIRGCCSLRHLPDVKGLHEPRPIVYCEKDW 976


>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
          Length = 1040

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 342  LTAFMIKKIVLR--ILVAHIPDQRKYLEPESIIQCPRDW 452
            ++A M++ I++R    + H+PD +   EP  I+ C +DW
Sbjct: 943  MSAPMLEAIMIRGCCSLRHLPDVQGLHEPRPIVYCEKDW 981


>02_03_0161 +
           15828887-15828985,15829066-15829686,15829759-15829908,
           15829994-15830389,15830455-15830487,15830553-15830693,
           15830793-15830924,15830999-15831082,15831159-15831461,
           15831543-15831734,15831805-15831942,15832019-15832143,
           15832223-15832319
          Length = 836

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +2

Query: 215 VCLLSFWI*YYVFCTPPRCKTLYTGHKPQVRVWIRSHSFFRKTNGIHDKKNCVKDTGS 388
           V LL FW   +V    P C   Y G  P +  +    +        +DKK C+ +TG+
Sbjct: 236 VPLLQFWAWEHVHINDPMCTLTYVGRPPPLMAYWNEMNVMTWLK--YDKK-CILETGT 290


>08_01_0652 +
           5627226-5628395,5628885-5629040,5629115-5629304,
           5629590-5629729
          Length = 551

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 23/72 (31%), Positives = 32/72 (44%)
 Frame = +2

Query: 293 KPQVRVWIRSHSFFRKTNGIHDKKNCVKDTGSTHPRPEKVPRTRIHHSVPKRLDISVWNS 472
           K  VRV   +  F  + NGI  +K  V+ TGS++ R EK  R    H      ++  W S
Sbjct: 475 KDDVRVHTLACLF--RANGIPIEKIYVRRTGSSYLRGEKFMRDLGKH------ELEFWGS 526

Query: 473 PTHSHGTNKRIC 508
            +   G N   C
Sbjct: 527 DSEFCGPNSEFC 538


>05_06_0015 +
           24953918-24954359,24955622-24955857,24955945-24956085,
           24956188-24956619,24956847-24956948
          Length = 450

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 89  SCCSSWAKLEISISWTC 39
           +CC SW  L + +SW+C
Sbjct: 369 TCCCSWRVLGLCLSWSC 385


>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
          Length = 908

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +3

Query: 378 ILVAHIPDQRKYLEPESIIQCPR----DWISQSGIAQRTLMERIREFVFVPE 521
           +LVA +P   +Y+   SI QCP+     W+ +  + +R ++    E + + E
Sbjct: 715 VLVAPMPHNFRYVRKLSISQCPKLLNITWVRRLELLERLVISNCDEMLTIVE 766


>04_03_0905 -
           20722090-20722207,20722314-20722395,20722698-20722851,
           20723026-20723089,20724282-20724404,20725326-20725452,
           20725541-20726171
          Length = 432

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 94  KANQP*IRCKRTHTILLIIIFGTFRWIVFKIYYKGTTKLISLSSVFLDLVLCILYSTP 267
           + N P +RC +TH + L  +     W V +     T  ++ L  + LD +L +LY  P
Sbjct: 213 RLNLPFVRCYQTHYLELWTLED---WAVLQGAPNFTLLVLGLGCIDLDKILLVLYLRP 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,874,085
Number of Sequences: 37544
Number of extensions: 407421
Number of successful extensions: 971
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)