Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1733
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025461-6|AAK84545.1|  335|Caenorhabditis elegans Hypothetical ...    31   1.4  
AF038618-12|AAM98017.2|  397|Caenorhabditis elegans P38 map kina...    29   5.5  
AF038618-11|AAM98016.1|  419|Caenorhabditis elegans P38 map kina...    29   5.5  
U40933-4|AAA81674.1|  778|Caenorhabditis elegans Caenorhabditis ...    28   7.3  
U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>AF025461-6|AAK84545.1|  335|Caenorhabditis elegans Hypothetical
           protein M01D1.10 protein.
          Length = 335

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 142 LIIIFGTFRWIVFKIYYKGTTKLISLSSVFLDLVLCILYSTPVQNVVYRP 291
           +++I G      F +    T + I    VF ++ LC+ +S PV+  +Y P
Sbjct: 21  VLLIMGIIEQFCFSVLSNKTKQFIRDIGVFENVKLCVHFSDPVKYEIYDP 70


>AF038618-12|AAM98017.2|  397|Caenorhabditis elegans P38 map kinase
           family protein 2,isoform b protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -1

Query: 678 PTRVVSQLQNLIICLKKIVCNELSDVTIITGPTDTNIRILIYQLNRGIK 532
           P    S L N+   +  ++ ++L ++  I   TD  I++LIYQ+ RG+K
Sbjct: 117 PDPDASSLNNVYF-VSVLMGSDLQNIMKIQRLTDEQIQLLIYQVLRGLK 164


>AF038618-11|AAM98016.1|  419|Caenorhabditis elegans P38 map kinase
           family protein 2,isoform a protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -1

Query: 678 PTRVVSQLQNLIICLKKIVCNELSDVTIITGPTDTNIRILIYQLNRGIK 532
           P    S L N+   +  ++ ++L ++  I   TD  I++LIYQ+ RG+K
Sbjct: 117 PDPDASSLNNVYF-VSVLMGSDLQNIMKIQRLTDEQIQLLIYQVLRGLK 164


>U40933-4|AAA81674.1|  778|Caenorhabditis elegans Caenorhabditis
           zeste white 10 (drosophila) homolog protein 1 protein.
          Length = 778

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = -1

Query: 645 IICLKKIVCNELSDVTIITGPTDTNIRILIYQLNRGIKADNVQEQKQILLFVP*ECVGLF 466
           + C   +   +  DV I+  PT    R LI Q  RG K D   +  ++L     E + +F
Sbjct: 236 VFCEAIVASRDGVDVYIVDNPTPDQTRFLINQKPRG-KKDKTIDVAKVL-----ESMEVF 289

Query: 465 QTEISSLLGTE*WIRVRG-TF-SGLGCVLPVSLTQFFL 358
            T++ S+L +   +   G TF S +G V+   L    L
Sbjct: 290 FTKLHSVLHSHELLDATGKTFTSMIGSVIEEQLITMIL 327


>U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical
           protein T05E8.3 protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 326 SFFRKTNGIHDKKNCVKDTGSTHPRPEKVPRTRI 427
           S FR TNGI  K+  ++ T  +   P+K+P+T I
Sbjct: 89  STFRITNGILKKEKKIEVTTISTQTPKKLPKTPI 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,286,727
Number of Sequences: 27780
Number of extensions: 373239
Number of successful extensions: 967
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)