Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1733
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.2  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 506 KFSYSFHESALGYSRLRYPVSWALNDGF 423
           K+SY    +  G + L++ V+W    GF
Sbjct: 268 KYSYEISNAFRGNNNLKWLVNWGEQWGF 295


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 189 INLKDYPPKGSKYND*KYCVCAFAT 115
           +NL +YPP+   Y+     +CA  T
Sbjct: 182 VNLVEYPPESGNYSA-DSAMCAMLT 205


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 13  HDYIHFSGRHVQEIEISNLAQLLQQEQKANQP 108
           HDY     R +    +S  A +LQ+E++   P
Sbjct: 329 HDYSRQFPRDLTTQTVSTTADVLQEEEEEYSP 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,189
Number of Sequences: 438
Number of extensions: 4610
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)